MTM1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MTM1

Myotubularin 1. (599 aa)

Predicted Functional Partners:

MTMR2

0.998

MTMR1

0.994

PIK3C2B

0.993

PIK3C2A

0.991

ENSODEP00000014715

0.991

MTMR14

0.990

PIK3C3

0.985

ENSODEP00000000553

0.980

MTMR12

0.980

PIKFYVE

0.977

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000553	ENSODEP00000014715	ENSODEP00000000553	ENSODEP00000014715	annotation not available	annotation not available	0.777
ENSODEP00000000553	MTM1	ENSODEP00000000553	ENSODEP00000001397	annotation not available	Myotubularin 1.	0.980
ENSODEP00000000553	MTMR1	ENSODEP00000000553	ENSODEP00000002374	annotation not available	Myotubularin related protein 1.	0.981
ENSODEP00000000553	MTMR12	ENSODEP00000000553	ENSODEP00000002691	annotation not available	Myotubularin related protein 12.	0.684
ENSODEP00000000553	MTMR14	ENSODEP00000000553	ENSODEP00000025012	annotation not available	Myotubularin related protein 14.	0.973
ENSODEP00000000553	MTMR2	ENSODEP00000000553	ENSODEP00000018184	annotation not available	Myotubularin related protein 2.	0.990
ENSODEP00000000553	PIK3C2A	ENSODEP00000000553	ENSODEP00000013049	annotation not available	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha.	0.777
ENSODEP00000000553	PIK3C2B	ENSODEP00000000553	ENSODEP00000016868	annotation not available	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta.	0.777
ENSODEP00000000553	PIK3C3	ENSODEP00000000553	ENSODEP00000025223	annotation not available	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.979
ENSODEP00000000553	PIKFYVE	ENSODEP00000000553	ENSODEP00000011958	annotation not available	Phosphoinositide kinase, FYVE-type zinc finger containing.	0.999
ENSODEP00000014715	ENSODEP00000000553	ENSODEP00000014715	ENSODEP00000000553	annotation not available	annotation not available	0.777
ENSODEP00000014715	MTM1	ENSODEP00000014715	ENSODEP00000001397	annotation not available	Myotubularin 1.	0.991
ENSODEP00000014715	MTMR1	ENSODEP00000014715	ENSODEP00000002374	annotation not available	Myotubularin related protein 1.	0.991
ENSODEP00000014715	MTMR12	ENSODEP00000014715	ENSODEP00000002691	annotation not available	Myotubularin related protein 12.	0.600
ENSODEP00000014715	MTMR14	ENSODEP00000014715	ENSODEP00000025012	annotation not available	Myotubularin related protein 14.	0.966
ENSODEP00000014715	MTMR2	ENSODEP00000014715	ENSODEP00000018184	annotation not available	Myotubularin related protein 2.	0.991
ENSODEP00000014715	PIK3C2A	ENSODEP00000014715	ENSODEP00000013049	annotation not available	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha.	0.983
ENSODEP00000014715	PIK3C2B	ENSODEP00000014715	ENSODEP00000016868	annotation not available	Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta.	0.985
ENSODEP00000014715	PIK3C3	ENSODEP00000014715	ENSODEP00000025223	annotation not available	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.881
ENSODEP00000014715	PIKFYVE	ENSODEP00000014715	ENSODEP00000011958	annotation not available	Phosphoinositide kinase, FYVE-type zinc finger containing.	0.972