STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERGIC1Endoplasmic reticulum-golgi intermediate compartment 1. (290 aa)    
Predicted Functional Partners:
ENSODEP00000002095
annotation not available
  
 0.979
SURF4
Surfeit 4.
   
 
 0.916
ERGIC3
ERGIC and golgi 3.
    
 
 0.897
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.816
COPE
Coatomer protein complex subunit epsilon.
   
 
 0.739
COPA
Coatomer protein complex subunit alpha.
   
 
 0.719
INA
Internexin neuronal intermediate filament protein alpha.
    
   0.709
DERL1
Derlin 1.
   
 
 0.698
COPB1
Coatomer protein complex subunit beta 1.
   
   0.698
DERL2
Derlin 2.
   
 
 0.698
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.