STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRCC1Leucine rich repeat and coiled-coil centrosomal protein 1. (1028 aa)    
Predicted Functional Partners:
DNALI1
Dynein axonemal light intermediate chain 1.
   
 0.846
NME8
NME/NM23 family member 8.
    
 0.783
Tonsl
Tonsoku like, DNA repair protein.
   
 0.777
ENSODEP00000025351
annotation not available
    
 0.772
ENSODEP00000000138
annotation not available
   
 
 0.749
DSN1
DSN1 component of MIS12 kinetochore complex.
   
 0.733
SKA3
Spindle and kinetochore associated complex subunit 3.
    
 
 0.722
MOB1A
MOB kinase activator 1A.
    
 
 0.721
CCDC65
Coiled-coil domain containing 65.
    
 
 0.717
SUOX
Sulfite oxidase.
    
 
 0.716
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.