Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GZMHGranzyme H. (246 aa)    
Predicted Functional Partners:
ENSODEP00000007021
annotation not available
    
 0.978
LOC101569705
annotation not available
    
 0.978
CASP8
Caspase 8.
    
 0.976
DFFA
DNA fragmentation factor subunit alpha.
    
 0.975
CASP7
Caspase 7.
    
 0.973
TUBA8
Tubulin alpha 8.
    
  0.970
TUBA4A
Tubulin alpha 4a.
    
  0.970
PARP1
poly(ADP-ribose) polymerase 1.
   
 0.970
LMNA
Lamin A/C.
    
 0.970
PARP2
poly(ADP-ribose) polymerase 2.
   
 0.963
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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