ENSODEP00000001417 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSODEP00000001417

annotation not available (60 aa)

Predicted Functional Partners:

ENSODEP00000000099

0.969

ENSODEP00000018854

0.959

ENSODEP00000021380

0.959

Fau

0.959

ENSODEP00000001190

0.935

ENSODEP00000013484

0.935

ENSODEP00000020274

0.935

ENSODEP00000024013

0.935

RPL15

0.933

ENSODEP00000009292

0.933

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000099	ENSODEP00000001190	ENSODEP00000000099	ENSODEP00000001190	annotation not available	annotation not available	0.992
ENSODEP00000000099	ENSODEP00000001417	ENSODEP00000000099	ENSODEP00000001417	annotation not available	annotation not available	0.969
ENSODEP00000000099	ENSODEP00000009292	ENSODEP00000000099	ENSODEP00000009292	annotation not available	annotation not available	0.997
ENSODEP00000000099	ENSODEP00000013484	ENSODEP00000000099	ENSODEP00000013484	annotation not available	annotation not available	0.992
ENSODEP00000000099	ENSODEP00000018854	ENSODEP00000000099	ENSODEP00000018854	annotation not available	annotation not available	0.998
ENSODEP00000000099	ENSODEP00000020274	ENSODEP00000000099	ENSODEP00000020274	annotation not available	annotation not available	0.992
ENSODEP00000000099	ENSODEP00000021380	ENSODEP00000000099	ENSODEP00000021380	annotation not available	annotation not available	0.998
ENSODEP00000000099	ENSODEP00000024013	ENSODEP00000000099	ENSODEP00000024013	annotation not available	annotation not available	0.992
ENSODEP00000000099	Fau	ENSODEP00000000099	ENSODEP00000024490	annotation not available	annotation not available	0.998
ENSODEP00000000099	RPL15	ENSODEP00000000099	ENSODEP00000003749	annotation not available	Ribosomal protein L15.	0.997
ENSODEP00000001190	ENSODEP00000000099	ENSODEP00000001190	ENSODEP00000000099	annotation not available	annotation not available	0.992
ENSODEP00000001190	ENSODEP00000001417	ENSODEP00000001190	ENSODEP00000001417	annotation not available	annotation not available	0.935
ENSODEP00000001190	ENSODEP00000009292	ENSODEP00000001190	ENSODEP00000009292	annotation not available	annotation not available	0.978
ENSODEP00000001190	ENSODEP00000018854	ENSODEP00000001190	ENSODEP00000018854	annotation not available	annotation not available	0.989
ENSODEP00000001190	ENSODEP00000021380	ENSODEP00000001190	ENSODEP00000021380	annotation not available	annotation not available	0.989
ENSODEP00000001190	Fau	ENSODEP00000001190	ENSODEP00000024490	annotation not available	annotation not available	0.989
ENSODEP00000001190	RPL15	ENSODEP00000001190	ENSODEP00000003749	annotation not available	Ribosomal protein L15.	0.978
ENSODEP00000001417	ENSODEP00000000099	ENSODEP00000001417	ENSODEP00000000099	annotation not available	annotation not available	0.969
ENSODEP00000001417	ENSODEP00000001190	ENSODEP00000001417	ENSODEP00000001190	annotation not available	annotation not available	0.935
ENSODEP00000001417	ENSODEP00000009292	ENSODEP00000001417	ENSODEP00000009292	annotation not available	annotation not available	0.933