STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001418annotation not available (71 aa)    
Predicted Functional Partners:
MRE11
MRE11 homolog, double strand break repair nuclease.
   
 0.995
ENSODEP00000024612
annotation not available
    
 0.995
ENSODEP00000010034
annotation not available
    
 0.992
ATM
ATM serine/threonine kinase.
    
 0.980
ENSODEP00000017844
annotation not available
    
 0.976
ENSODEP00000009470
annotation not available
   
 0.947
RAD51
RAD51 recombinase.
   
 0.945
FANCD2
FA complementation group D2.
    
 
 0.935
RB1
RB transcriptional corepressor 1.
    
   0.926
ATR
ATR serine/threonine kinase.
    
 0.926
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: medium (80%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.