Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001421annotation not available (491 aa)    
Predicted Functional Partners:
CDH1
Cadherin-1-like.
    
 0.968
VIRMA
Vir like m6A methyltransferase associated.
    
 0.960
CDH3
Cadherin 3.
    
 0.929
ZC3H13
Zinc finger CCCH-type containing 13.
    
 0.894
SERTAD4
SERTA domain containing 4.
    
   0.861
ENSODEP00000000318
annotation not available
    
 
 0.805
ENSODEP00000000515
annotation not available
    
 
 0.805
ENSODEP00000004682
annotation not available
    
 
 0.805
ENSODEP00000006482
annotation not available
    
 
 0.805
ENSODEP00000010771
annotation not available
    
 
 0.805
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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