ENSODEP00000001423 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

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[Homology]

Score

ENSODEP00000001423

annotation not available (233 aa)

Predicted Functional Partners:

EFL1

0.923

ENSODEP00000000254

0.843

ENSODEP00000017581

0.843

ENSODEP00000009779

0.757

TIGAR

0.720

ENSODEP00000001116

0.716

RNF2

0.693

RPUSD2

0.674

ENSODEP00000013262

0.672

LOC101562493

0.672

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFL1	ENSODEP00000000254	ENSODEP00000022034	ENSODEP00000000254	Elongation factor like GTPase 1.	annotation not available	0.922
EFL1	ENSODEP00000001423	ENSODEP00000022034	ENSODEP00000001423	Elongation factor like GTPase 1.	annotation not available	0.923
EFL1	ENSODEP00000009779	ENSODEP00000022034	ENSODEP00000009779	Elongation factor like GTPase 1.	annotation not available	0.865
EFL1	ENSODEP00000013262	ENSODEP00000022034	ENSODEP00000013262	Elongation factor like GTPase 1.	annotation not available	0.565
EFL1	ENSODEP00000017581	ENSODEP00000022034	ENSODEP00000017581	Elongation factor like GTPase 1.	annotation not available	0.922
EFL1	LOC101562493	ENSODEP00000022034	ENSODEP00000017164	Elongation factor like GTPase 1.	Putative 60S ribosomal protein L37a.	0.565
ENSODEP00000000254	EFL1	ENSODEP00000000254	ENSODEP00000022034	annotation not available	Elongation factor like GTPase 1.	0.922
ENSODEP00000000254	ENSODEP00000001423	ENSODEP00000000254	ENSODEP00000001423	annotation not available	annotation not available	0.843
ENSODEP00000000254	ENSODEP00000009779	ENSODEP00000000254	ENSODEP00000009779	annotation not available	annotation not available	0.498
ENSODEP00000000254	ENSODEP00000013262	ENSODEP00000000254	ENSODEP00000013262	annotation not available	annotation not available	0.681
ENSODEP00000000254	LOC101562493	ENSODEP00000000254	ENSODEP00000017164	annotation not available	Putative 60S ribosomal protein L37a.	0.681
ENSODEP00000001116	ENSODEP00000001423	ENSODEP00000001116	ENSODEP00000001423	annotation not available	annotation not available	0.716
ENSODEP00000001423	EFL1	ENSODEP00000001423	ENSODEP00000022034	annotation not available	Elongation factor like GTPase 1.	0.923
ENSODEP00000001423	ENSODEP00000000254	ENSODEP00000001423	ENSODEP00000000254	annotation not available	annotation not available	0.843
ENSODEP00000001423	ENSODEP00000001116	ENSODEP00000001423	ENSODEP00000001116	annotation not available	annotation not available	0.716
ENSODEP00000001423	ENSODEP00000009779	ENSODEP00000001423	ENSODEP00000009779	annotation not available	annotation not available	0.757
ENSODEP00000001423	ENSODEP00000013262	ENSODEP00000001423	ENSODEP00000013262	annotation not available	annotation not available	0.672
ENSODEP00000001423	ENSODEP00000017581	ENSODEP00000001423	ENSODEP00000017581	annotation not available	annotation not available	0.843
ENSODEP00000001423	LOC101562493	ENSODEP00000001423	ENSODEP00000017164	annotation not available	Putative 60S ribosomal protein L37a.	0.672
ENSODEP00000001423	RNF2	ENSODEP00000001423	ENSODEP00000000968	annotation not available	Ring finger protein 2.	0.693