IBA57 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

IBA57

Iron-sulfur cluster assembly factor IBA57. (328 aa)

Predicted Functional Partners:

ENSODEP00000004885

0.970

ENSODEP00000021164

0.970

ENSODEP00000017643

0.864

ENSODEP00000001528

0.841

ENSODEP00000004235

0.841

ENSODEP00000007346

0.841

ENSODEP00000017504

0.841

ENSODEP00000022354

0.841

GLDC

0.837

PUM1

0.812

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001528	ENSODEP00000004885	ENSODEP00000001528	ENSODEP00000004885	annotation not available	annotation not available	0.948
ENSODEP00000001528	ENSODEP00000021164	ENSODEP00000001528	ENSODEP00000021164	annotation not available	annotation not available	0.949
ENSODEP00000001528	IBA57	ENSODEP00000001528	ENSODEP00000001425	annotation not available	Iron-sulfur cluster assembly factor IBA57.	0.841
ENSODEP00000001528	PUM1	ENSODEP00000001528	ENSODEP00000004544	annotation not available	Pumilio RNA binding family member 1.	0.569
ENSODEP00000004235	ENSODEP00000004885	ENSODEP00000004235	ENSODEP00000004885	annotation not available	annotation not available	0.945
ENSODEP00000004235	ENSODEP00000021164	ENSODEP00000004235	ENSODEP00000021164	annotation not available	annotation not available	0.956
ENSODEP00000004235	IBA57	ENSODEP00000004235	ENSODEP00000001425	annotation not available	Iron-sulfur cluster assembly factor IBA57.	0.841
ENSODEP00000004235	PUM1	ENSODEP00000004235	ENSODEP00000004544	annotation not available	Pumilio RNA binding family member 1.	0.569
ENSODEP00000004885	ENSODEP00000001528	ENSODEP00000004885	ENSODEP00000001528	annotation not available	annotation not available	0.948
ENSODEP00000004885	ENSODEP00000004235	ENSODEP00000004885	ENSODEP00000004235	annotation not available	annotation not available	0.945
ENSODEP00000004885	ENSODEP00000007346	ENSODEP00000004885	ENSODEP00000007346	annotation not available	annotation not available	0.946
ENSODEP00000004885	ENSODEP00000017504	ENSODEP00000004885	ENSODEP00000017504	annotation not available	annotation not available	0.944
ENSODEP00000004885	ENSODEP00000022354	ENSODEP00000004885	ENSODEP00000022354	annotation not available	annotation not available	0.947
ENSODEP00000004885	IBA57	ENSODEP00000004885	ENSODEP00000001425	annotation not available	Iron-sulfur cluster assembly factor IBA57.	0.970
ENSODEP00000004885	PUM1	ENSODEP00000004885	ENSODEP00000004544	annotation not available	Pumilio RNA binding family member 1.	0.759
ENSODEP00000007346	ENSODEP00000004885	ENSODEP00000007346	ENSODEP00000004885	annotation not available	annotation not available	0.946
ENSODEP00000007346	ENSODEP00000021164	ENSODEP00000007346	ENSODEP00000021164	annotation not available	annotation not available	0.930
ENSODEP00000007346	IBA57	ENSODEP00000007346	ENSODEP00000001425	annotation not available	Iron-sulfur cluster assembly factor IBA57.	0.841
ENSODEP00000007346	PUM1	ENSODEP00000007346	ENSODEP00000004544	annotation not available	Pumilio RNA binding family member 1.	0.569
ENSODEP00000017504	ENSODEP00000004885	ENSODEP00000017504	ENSODEP00000004885	annotation not available	annotation not available	0.944