STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001430annotation not available (285 aa)    
Predicted Functional Partners:
CLN6
CLN6 transmembrane ER protein.
      
 0.884
ENSODEP00000007059
annotation not available
      
 0.854
Cln3
CLN3 lysosomal/endosomal transmembrane protein, battenin.
      
 0.829
PPT1
Palmitoyl-protein thioesterase 1.
      
 0.819
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.817
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.797
SPAG17
Sperm associated antigen 17.
    
 
 0.778
CCDC189
Coiled-coil domain containing 189.
    
 
 0.777
TLCD3B
TLC domain containing 3B.
      
 0.757
Dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.697
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.