STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC47A1Solute carrier family 47 member 1. (566 aa)    
Predicted Functional Partners:
TRMT10A
tRNA methyltransferase 10A.
   
 0.986
ENSODEP00000013125
annotation not available
    
 0.958
ENSODEP00000014424
annotation not available
    
 0.958
ENSODEP00000014459
annotation not available
    
 0.958
ENSODEP00000026339
annotation not available
    
 0.958
ENSODEP00000027024
annotation not available
    
 0.958
POP1
POP1 homolog, ribonuclease P/MRP subunit.
   
 
 0.920
RPP21
Ribonuclease P/MRP subunit p21.
    
 0.914
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
  
 
 0.907
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
  
 
 0.898
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.