LOC101569208 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

LOC101569208

annotation not available (177 aa)

Predicted Functional Partners:

ENSODEP00000022849

0.843

PTGS1

0.825

CDC73

0.820

PTGS2

0.796

CINP

0.771

CTR9

0.771

PTGIS

0.758

CDYL

0.677

CDYL2

0.677

RTF1

0.665

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC73	CINP	ENSODEP00000014180	ENSODEP00000003360	Cell division cycle 73.	Cyclin dependent kinase 2 interacting protein.	0.972
CDC73	CTR9	ENSODEP00000014180	ENSODEP00000009982	Cell division cycle 73.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
CDC73	ENSODEP00000022849	ENSODEP00000014180	ENSODEP00000022849	Cell division cycle 73.	annotation not available	0.998
CDC73	LOC101569208	ENSODEP00000014180	ENSODEP00000001435	Cell division cycle 73.	annotation not available	0.820
CDC73	RTF1	ENSODEP00000014180	ENSODEP00000023072	Cell division cycle 73.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.996
CDYL	CDYL2	ENSODEP00000008143	ENSODEP00000017475	Chromodomain Y like.	Chromodomain Y like 2.	0.768
CDYL	LOC101569208	ENSODEP00000008143	ENSODEP00000001435	Chromodomain Y like.	annotation not available	0.677
CDYL2	CDYL	ENSODEP00000017475	ENSODEP00000008143	Chromodomain Y like 2.	Chromodomain Y like.	0.768
CDYL2	LOC101569208	ENSODEP00000017475	ENSODEP00000001435	Chromodomain Y like 2.	annotation not available	0.677
CINP	CDC73	ENSODEP00000003360	ENSODEP00000014180	Cyclin dependent kinase 2 interacting protein.	Cell division cycle 73.	0.972
CINP	ENSODEP00000022849	ENSODEP00000003360	ENSODEP00000022849	Cyclin dependent kinase 2 interacting protein.	annotation not available	0.976
CINP	LOC101569208	ENSODEP00000003360	ENSODEP00000001435	Cyclin dependent kinase 2 interacting protein.	annotation not available	0.771
CINP	RTF1	ENSODEP00000003360	ENSODEP00000023072	Cyclin dependent kinase 2 interacting protein.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.969
CTR9	CDC73	ENSODEP00000009982	ENSODEP00000014180	CTR9 homolog, Paf1/RNA polymerase II complex component.	Cell division cycle 73.	0.999
CTR9	ENSODEP00000022849	ENSODEP00000009982	ENSODEP00000022849	CTR9 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.999
CTR9	LOC101569208	ENSODEP00000009982	ENSODEP00000001435	CTR9 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.771
CTR9	RTF1	ENSODEP00000009982	ENSODEP00000023072	CTR9 homolog, Paf1/RNA polymerase II complex component.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.998
ENSODEP00000022849	CDC73	ENSODEP00000022849	ENSODEP00000014180	annotation not available	Cell division cycle 73.	0.998
ENSODEP00000022849	CINP	ENSODEP00000022849	ENSODEP00000003360	annotation not available	Cyclin dependent kinase 2 interacting protein.	0.976
ENSODEP00000022849	CTR9	ENSODEP00000022849	ENSODEP00000009982	annotation not available	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999