STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF13Ring finger protein 13. (381 aa)    
Predicted Functional Partners:
AP3D1
Adaptor related protein complex 3 subunit delta 1.
    
   0.840
CD63
CD63 molecule.
    
 
 0.828
Ap3s1
annotation not available
    
 
 0.812
ENSODEP00000003448
annotation not available
    
 
 0.812
ENSODEP00000003672
annotation not available
    
 
 0.812
ENSODEP00000008223
annotation not available
    
 
 0.812
ENSODEP00000020328
annotation not available
    
 
 0.812
CLCN7
Chloride voltage-gated channel 7.
    
   0.804
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.718
ENSODEP00000023195
annotation not available
    
 
 0.679
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.