RNF13 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF13

Ring finger protein 13. (381 aa)

Predicted Functional Partners:

ENSODEP00000006216

0.794

ENSODEP00000012954

0.794

Rps27a

0.794

ENSODEP00000026236

0.794

ENSODEP00000026645

0.794

ENSODEP00000026177

0.793

ENSODEP00000026556

0.793

OTUB2

0.705

ENSODEP00000002981

0.679

Otub1

0.679

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000002981	ENSODEP00000006216	ENSODEP00000002981	ENSODEP00000006216	annotation not available	annotation not available	0.842
ENSODEP00000002981	ENSODEP00000012954	ENSODEP00000002981	ENSODEP00000012954	annotation not available	annotation not available	0.842
ENSODEP00000002981	ENSODEP00000026177	ENSODEP00000002981	ENSODEP00000026177	annotation not available	annotation not available	0.895
ENSODEP00000002981	ENSODEP00000026236	ENSODEP00000002981	ENSODEP00000026236	annotation not available	annotation not available	0.842
ENSODEP00000002981	ENSODEP00000026556	ENSODEP00000002981	ENSODEP00000026556	annotation not available	annotation not available	0.895
ENSODEP00000002981	ENSODEP00000026645	ENSODEP00000002981	ENSODEP00000026645	annotation not available	annotation not available	0.842
ENSODEP00000002981	RNF13	ENSODEP00000002981	ENSODEP00000001439	annotation not available	Ring finger protein 13.	0.679
ENSODEP00000002981	Rps27a	ENSODEP00000002981	ENSODEP00000018046	annotation not available	annotation not available	0.842
ENSODEP00000006216	ENSODEP00000002981	ENSODEP00000006216	ENSODEP00000002981	annotation not available	annotation not available	0.842
ENSODEP00000006216	ENSODEP00000026177	ENSODEP00000006216	ENSODEP00000026177	annotation not available	annotation not available	0.981
ENSODEP00000006216	ENSODEP00000026556	ENSODEP00000006216	ENSODEP00000026556	annotation not available	annotation not available	0.972
ENSODEP00000006216	OTUB2	ENSODEP00000006216	ENSODEP00000011851	annotation not available	OTU deubiquitinase, ubiquitin aldehyde binding 2.	0.846
ENSODEP00000006216	Otub1	ENSODEP00000006216	ENSODEP00000021398	annotation not available	annotation not available	0.842
ENSODEP00000006216	RNF13	ENSODEP00000006216	ENSODEP00000001439	annotation not available	Ring finger protein 13.	0.794
ENSODEP00000012954	ENSODEP00000002981	ENSODEP00000012954	ENSODEP00000002981	annotation not available	annotation not available	0.842
ENSODEP00000012954	ENSODEP00000026177	ENSODEP00000012954	ENSODEP00000026177	annotation not available	annotation not available	0.981
ENSODEP00000012954	ENSODEP00000026556	ENSODEP00000012954	ENSODEP00000026556	annotation not available	annotation not available	0.972
ENSODEP00000012954	OTUB2	ENSODEP00000012954	ENSODEP00000011851	annotation not available	OTU deubiquitinase, ubiquitin aldehyde binding 2.	0.846
ENSODEP00000012954	Otub1	ENSODEP00000012954	ENSODEP00000021398	annotation not available	annotation not available	0.842
ENSODEP00000012954	RNF13	ENSODEP00000012954	ENSODEP00000001439	annotation not available	Ring finger protein 13.	0.794