STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001441annotation not available (125 aa)    
Predicted Functional Partners:
ENSODEP00000000258
annotation not available
   
   0.995
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.903
SFI1
SFI1 centrin binding protein.
    
 0.896
LRRC46
Leucine rich repeat containing 46.
   
 
 0.848
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.841
DEUP1
Deuterosome assembly protein 1.
    
 0.821
ENSODEP00000001663
annotation not available
    
 0.819
ENSODEP00000008486
annotation not available
    
 0.819
ENSODEP00000010963
annotation not available
    
 0.819
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
    
 0.819
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.