NEURL1B protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

NEURL1B

Neuralized E3 ubiquitin protein ligase 1B. (315 aa)

Predicted Functional Partners:

ENSODEP00000011836

0.947

ENSODEP00000012279

0.947

GSAP

0.873

EPN2

0.857

ENSODEP00000016306

0.857

ENTHD1

0.857

EPN3

0.857

SQSTM1

0.841

ENSODEP00000024666

0.841

ANTXR1

0.805

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANTXR1	ENSODEP00000011836	ENSODEP00000015525	ENSODEP00000011836	ANTXR cell adhesion molecule 1.	annotation not available	0.579
ANTXR1	ENSODEP00000012279	ENSODEP00000015525	ENSODEP00000012279	ANTXR cell adhesion molecule 1.	annotation not available	0.579
ANTXR1	NEURL1B	ENSODEP00000015525	ENSODEP00000001444	ANTXR cell adhesion molecule 1.	Neuralized E3 ubiquitin protein ligase 1B.	0.805
ENSODEP00000011836	ANTXR1	ENSODEP00000011836	ENSODEP00000015525	annotation not available	ANTXR cell adhesion molecule 1.	0.579
ENSODEP00000011836	ENSODEP00000012279	ENSODEP00000011836	ENSODEP00000012279	annotation not available	annotation not available	0.984
ENSODEP00000011836	ENSODEP00000024666	ENSODEP00000011836	ENSODEP00000024666	annotation not available	annotation not available	0.952
ENSODEP00000011836	NEURL1B	ENSODEP00000011836	ENSODEP00000001444	annotation not available	Neuralized E3 ubiquitin protein ligase 1B.	0.947
ENSODEP00000012279	ANTXR1	ENSODEP00000012279	ENSODEP00000015525	annotation not available	ANTXR cell adhesion molecule 1.	0.579
ENSODEP00000012279	ENSODEP00000011836	ENSODEP00000012279	ENSODEP00000011836	annotation not available	annotation not available	0.984
ENSODEP00000012279	ENSODEP00000024666	ENSODEP00000012279	ENSODEP00000024666	annotation not available	annotation not available	0.952
ENSODEP00000012279	NEURL1B	ENSODEP00000012279	ENSODEP00000001444	annotation not available	Neuralized E3 ubiquitin protein ligase 1B.	0.947
ENSODEP00000016306	EPN3	ENSODEP00000016306	ENSODEP00000023127	annotation not available	Epsin 3.	0.972
ENSODEP00000016306	NEURL1B	ENSODEP00000016306	ENSODEP00000001444	annotation not available	Neuralized E3 ubiquitin protein ligase 1B.	0.857
ENSODEP00000024666	ENSODEP00000011836	ENSODEP00000024666	ENSODEP00000011836	annotation not available	annotation not available	0.952
ENSODEP00000024666	ENSODEP00000012279	ENSODEP00000024666	ENSODEP00000012279	annotation not available	annotation not available	0.952
ENSODEP00000024666	GSAP	ENSODEP00000024666	ENSODEP00000009660	annotation not available	Gamma-secretase activating protein.	0.841
ENSODEP00000024666	NEURL1B	ENSODEP00000024666	ENSODEP00000001444	annotation not available	Neuralized E3 ubiquitin protein ligase 1B.	0.841
ENSODEP00000024666	SQSTM1	ENSODEP00000024666	ENSODEP00000010079	annotation not available	Sequestosome 1.	0.999
ENTHD1	EPN2	ENSODEP00000018615	ENSODEP00000000982	ENTH domain containing 1.	Epsin 2.	0.540
ENTHD1	EPN3	ENSODEP00000018615	ENSODEP00000023127	ENTH domain containing 1.	Epsin 3.	0.979