STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM11Tripartite motif containing 11. (468 aa)    
Predicted Functional Partners:
NUDCD1
NudC domain containing 1.
    
 
 0.929
MED15
Mediator complex subunit 15.
    
 
 0.925
DDX58
DExD/H-box helicase 58.
   
 0.871
ICOS
Inducible T cell costimulator.
   
 0.855
ENSODEP00000017439
annotation not available
    
 
 0.794
ENSODEP00000021807
annotation not available
    
 
 0.794
SQSTM1
Sequestosome 1.
    
 0.789
RO60
Ro60, Y RNA binding protein.
   
 0.778
CTLA4
Cytotoxic T-lymphocyte associated protein 4.
    
 0.766
VSTM2L
V-set and transmembrane domain containing 2 like.
      
 0.757
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.