ENSODEP00000001454 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSODEP00000001454

annotation not available (232 aa)

Predicted Functional Partners:

ENSODEP00000007616

0.969

RSL24D1

0.963

PES1

0.959

ENSODEP00000001214

0.953

ENSODEP00000025828

0.953

WDR12

0.945

NOP53

0.944

DDX18

0.943

WDR74

0.940

ENSODEP00000008366

0.940

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX18	ENSODEP00000001214	ENSODEP00000009802	ENSODEP00000001214	DEAD-box helicase 18.	annotation not available	0.982
DDX18	ENSODEP00000001454	ENSODEP00000009802	ENSODEP00000001454	DEAD-box helicase 18.	annotation not available	0.943
DDX18	ENSODEP00000007616	ENSODEP00000009802	ENSODEP00000007616	DEAD-box helicase 18.	annotation not available	0.993
DDX18	ENSODEP00000008366	ENSODEP00000009802	ENSODEP00000008366	DEAD-box helicase 18.	annotation not available	0.992
DDX18	ENSODEP00000025828	ENSODEP00000009802	ENSODEP00000025828	DEAD-box helicase 18.	annotation not available	0.982
DDX18	NOP53	ENSODEP00000009802	ENSODEP00000008981	DEAD-box helicase 18.	NOP53 ribosome biogenesis factor.	0.841
DDX18	PES1	ENSODEP00000009802	ENSODEP00000004180	DEAD-box helicase 18.	Pescadillo ribosomal biogenesis factor 1.	0.993
DDX18	RSL24D1	ENSODEP00000009802	ENSODEP00000007273	DEAD-box helicase 18.	Ribosomal L24 domain containing 1.	0.988
DDX18	WDR12	ENSODEP00000009802	ENSODEP00000015728	DEAD-box helicase 18.	WD repeat domain 12.	0.996
DDX18	WDR74	ENSODEP00000009802	ENSODEP00000004104	DEAD-box helicase 18.	WD repeat domain 74.	0.991
ENSODEP00000001214	DDX18	ENSODEP00000001214	ENSODEP00000009802	annotation not available	DEAD-box helicase 18.	0.982
ENSODEP00000001214	ENSODEP00000001454	ENSODEP00000001214	ENSODEP00000001454	annotation not available	annotation not available	0.953
ENSODEP00000001214	ENSODEP00000007616	ENSODEP00000001214	ENSODEP00000007616	annotation not available	annotation not available	0.989
ENSODEP00000001214	ENSODEP00000008366	ENSODEP00000001214	ENSODEP00000008366	annotation not available	annotation not available	0.980
ENSODEP00000001214	NOP53	ENSODEP00000001214	ENSODEP00000008981	annotation not available	NOP53 ribosome biogenesis factor.	0.980
ENSODEP00000001214	PES1	ENSODEP00000001214	ENSODEP00000004180	annotation not available	Pescadillo ribosomal biogenesis factor 1.	0.985
ENSODEP00000001214	RSL24D1	ENSODEP00000001214	ENSODEP00000007273	annotation not available	Ribosomal L24 domain containing 1.	0.994
ENSODEP00000001214	WDR12	ENSODEP00000001214	ENSODEP00000015728	annotation not available	WD repeat domain 12.	0.983
ENSODEP00000001214	WDR74	ENSODEP00000001214	ENSODEP00000004104	annotation not available	WD repeat domain 74.	0.976
ENSODEP00000001454	DDX18	ENSODEP00000001454	ENSODEP00000009802	annotation not available	DEAD-box helicase 18.	0.943