STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001464annotation not available (216 aa)    
Predicted Functional Partners:
ENSODEP00000000433
annotation not available
    
 
 0.806
ENSODEP00000021694
annotation not available
    
 
 0.806
ATP6V1B1
ATPase H+ transporting V1 subunit B1.
    
 
 0.780
ATP6V1C2
ATPase H+ transporting V1 subunit C2.
    
 
 0.759
ENSODEP00000007400
annotation not available
    
 
 0.753
ENSODEP00000017754
annotation not available
    
 
 0.753
ENSODEP00000001166
annotation not available
    
 
 0.752
ATP6V1D
ATPase H+ transporting V1 subunit D.
    
 
 0.752
ATP6V1F
ATPase H+ transporting V1 subunit F.
    
   0.749
ATP6V1G2
ATPase H+ transporting V1 subunit G2.
    
 
 0.748
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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