DSCC1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

DSCC1

DNA replication and sister chromatid cohesion 1. (228 aa)

Predicted Functional Partners:

ENSODEP00000020563

0.999

RFC4

0.998

RFC5

0.996

ENSODEP00000025305

0.995

ENSODEP00000000602

0.994

ENSODEP00000009503

0.994

ENSODEP00000026000

0.993

ENSODEP00000007543

0.991

ENSODEP00000020816

0.991

ATAD5

0.980

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATAD5	DSCC1	ENSODEP00000018999	ENSODEP00000001468	ATPase family AAA domain containing 5.	DNA replication and sister chromatid cohesion 1.	0.980
ATAD5	ENSODEP00000000602	ENSODEP00000018999	ENSODEP00000000602	ATPase family AAA domain containing 5.	annotation not available	0.986
ATAD5	ENSODEP00000007543	ENSODEP00000018999	ENSODEP00000007543	ATPase family AAA domain containing 5.	annotation not available	0.983
ATAD5	ENSODEP00000009503	ENSODEP00000018999	ENSODEP00000009503	ATPase family AAA domain containing 5.	annotation not available	0.986
ATAD5	ENSODEP00000020563	ENSODEP00000018999	ENSODEP00000020563	ATPase family AAA domain containing 5.	annotation not available	0.983
ATAD5	ENSODEP00000020816	ENSODEP00000018999	ENSODEP00000020816	ATPase family AAA domain containing 5.	annotation not available	0.983
ATAD5	ENSODEP00000025305	ENSODEP00000018999	ENSODEP00000025305	ATPase family AAA domain containing 5.	annotation not available	0.674
ATAD5	ENSODEP00000026000	ENSODEP00000018999	ENSODEP00000026000	ATPase family AAA domain containing 5.	annotation not available	0.674
ATAD5	RFC4	ENSODEP00000018999	ENSODEP00000002563	ATPase family AAA domain containing 5.	Replication factor C subunit 4.	0.996
ATAD5	RFC5	ENSODEP00000018999	ENSODEP00000008768	ATPase family AAA domain containing 5.	Replication factor C subunit 5.	0.996
DSCC1	ATAD5	ENSODEP00000001468	ENSODEP00000018999	DNA replication and sister chromatid cohesion 1.	ATPase family AAA domain containing 5.	0.980
DSCC1	ENSODEP00000000602	ENSODEP00000001468	ENSODEP00000000602	DNA replication and sister chromatid cohesion 1.	annotation not available	0.994
DSCC1	ENSODEP00000007543	ENSODEP00000001468	ENSODEP00000007543	DNA replication and sister chromatid cohesion 1.	annotation not available	0.991
DSCC1	ENSODEP00000009503	ENSODEP00000001468	ENSODEP00000009503	DNA replication and sister chromatid cohesion 1.	annotation not available	0.994
DSCC1	ENSODEP00000020563	ENSODEP00000001468	ENSODEP00000020563	DNA replication and sister chromatid cohesion 1.	annotation not available	0.999
DSCC1	ENSODEP00000020816	ENSODEP00000001468	ENSODEP00000020816	DNA replication and sister chromatid cohesion 1.	annotation not available	0.991
DSCC1	ENSODEP00000025305	ENSODEP00000001468	ENSODEP00000025305	DNA replication and sister chromatid cohesion 1.	annotation not available	0.995
DSCC1	ENSODEP00000026000	ENSODEP00000001468	ENSODEP00000026000	DNA replication and sister chromatid cohesion 1.	annotation not available	0.993
DSCC1	RFC4	ENSODEP00000001468	ENSODEP00000002563	DNA replication and sister chromatid cohesion 1.	Replication factor C subunit 4.	0.998
DSCC1	RFC5	ENSODEP00000001468	ENSODEP00000008768	DNA replication and sister chromatid cohesion 1.	Replication factor C subunit 5.	0.996