STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001474annotation not available (98 aa)    
Predicted Functional Partners:
ENSODEP00000016536
annotation not available
    
 0.971
APOBEC4
Apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4.
     
 0.940
RBM47
RNA binding motif protein 47.
    
 0.920
APOB
Apolipoprotein B.
      
 0.861
CDA
Cytidine deaminase.
      
 0.859
APOBEC2
Apolipoprotein B mRNA editing enzyme catalytic subunit 2.
    
 0.856
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
    
 0.802
UNG
Uracil DNA glycosylase.
     
 0.790
TDG
Thymine DNA glycosylase.
      
 0.739
ENSODEP00000001036
annotation not available
    
 0.723
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.