STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLC25A40Solute carrier family 25 member 40. (338 aa)    
Predicted Functional Partners:
CNOT4
CCR4-NOT transcription complex subunit 4.
      
 0.741
PUM1
Pumilio RNA binding family member 1.
    
   0.713
PUM2
Pumilio RNA binding family member 2.
    
   0.713
RUNDC3B
RUN domain containing 3B.
      
 0.584
DLGAP3
DLG associated protein 3.
      
 0.581
ENSODEP00000025106
annotation not available
      
 0.581
CROT
Carnitine O-octanoyltransferase.
      
 0.545
TMCO1
Transmembrane and coiled-coil domains 1.
      
 0.537
RUNDC3A
RUN domain containing 3A.
      
 0.532
SLC5A9
Solute carrier family 5 member 9.
      
 0.530
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.