STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECHDC3enoyl-CoA hydratase domain containing 3. (298 aa)    
Predicted Functional Partners:
IVD
isovaleryl-CoA dehydrogenase.
   
 
 0.669
HADH
hydroxyacyl-CoA dehydrogenase.
     
 0.654
SFXN5
Sideroflexin 5.
      
 0.607
FMO1
Flavin containing dimethylaniline monoxygenase 1.
      
 0.604
USP6NL
USP6 N-terminal like.
      
 0.581
PAFAH2
Platelet activating factor acetylhydrolase 2.
      
 0.581
LOC101566199
Survival of motor neuron protein-like.
    
   0.580
ACADL
acyl-CoA dehydrogenase long chain.
   
 
 0.562
ECHS1
enoyl-CoA hydratase, short chain 1.
  
  
0.561
FAM168A
Family with sequence similarity 168 member A.
      
 0.554
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.