Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DBF4DBF4 zinc finger. (663 aa)    
Predicted Functional Partners:
CDC7
Cell division cycle 7.
   
 0.999
MCM4
Minichromosome maintenance complex component 4.
   
 0.997
MCM2
Minichromosome maintenance complex component 2.
   
 0.995
ORC4
Origin recognition complex subunit 4.
    
 0.995
ENSODEP00000023297
annotation not available
   
 0.995
ORC2
Origin recognition complex subunit 2.
   
 0.994
ENSODEP00000002969
annotation not available
   
 0.989
ENSODEP00000014606
annotation not available
   
 0.989
MCM5
Minichromosome maintenance complex component 5.
   
 0.987
ORC5
Origin recognition complex subunit 5.
    
 0.986
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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