SYT9 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SYT9

Synaptotagmin 9. (503 aa)

Predicted Functional Partners:

SYT10

0.901

SYT2

0.896

SYT6

0.809

SYT3

0.809

STON2

0.763

ENSODEP00000010090

0.762

ENSODEP00000010785

0.762

ENSODEP00000024482

0.727

VAMP8

0.725

SLC18A3

0.725

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000010090	ENSODEP00000010785	ENSODEP00000010090	ENSODEP00000010785	annotation not available	annotation not available	0.976
ENSODEP00000010090	ENSODEP00000024482	ENSODEP00000010090	ENSODEP00000024482	annotation not available	annotation not available	0.826
ENSODEP00000010090	SLC18A3	ENSODEP00000010090	ENSODEP00000025809	annotation not available	Solute carrier family 18 member A3.	0.593
ENSODEP00000010090	STON2	ENSODEP00000010090	ENSODEP00000016480	annotation not available	Stonin 2.	0.949
ENSODEP00000010090	SYT10	ENSODEP00000010090	ENSODEP00000023839	annotation not available	Synaptotagmin 10.	0.704
ENSODEP00000010090	SYT2	ENSODEP00000010090	ENSODEP00000015078	annotation not available	Synaptotagmin 2.	0.704
ENSODEP00000010090	SYT3	ENSODEP00000010090	ENSODEP00000023086	annotation not available	Synaptotagmin 3.	0.704
ENSODEP00000010090	SYT6	ENSODEP00000010090	ENSODEP00000009748	annotation not available	Synaptotagmin 6.	0.704
ENSODEP00000010090	SYT9	ENSODEP00000010090	ENSODEP00000001508	annotation not available	Synaptotagmin 9.	0.762
ENSODEP00000010090	VAMP8	ENSODEP00000010090	ENSODEP00000004070	annotation not available	Vesicle associated membrane protein 8.	0.826
ENSODEP00000010785	ENSODEP00000010090	ENSODEP00000010785	ENSODEP00000010090	annotation not available	annotation not available	0.976
ENSODEP00000010785	ENSODEP00000024482	ENSODEP00000010785	ENSODEP00000024482	annotation not available	annotation not available	0.826
ENSODEP00000010785	SLC18A3	ENSODEP00000010785	ENSODEP00000025809	annotation not available	Solute carrier family 18 member A3.	0.593
ENSODEP00000010785	STON2	ENSODEP00000010785	ENSODEP00000016480	annotation not available	Stonin 2.	0.949
ENSODEP00000010785	SYT10	ENSODEP00000010785	ENSODEP00000023839	annotation not available	Synaptotagmin 10.	0.704
ENSODEP00000010785	SYT2	ENSODEP00000010785	ENSODEP00000015078	annotation not available	Synaptotagmin 2.	0.704
ENSODEP00000010785	SYT3	ENSODEP00000010785	ENSODEP00000023086	annotation not available	Synaptotagmin 3.	0.704
ENSODEP00000010785	SYT6	ENSODEP00000010785	ENSODEP00000009748	annotation not available	Synaptotagmin 6.	0.704
ENSODEP00000010785	SYT9	ENSODEP00000010785	ENSODEP00000001508	annotation not available	Synaptotagmin 9.	0.762
ENSODEP00000010785	VAMP8	ENSODEP00000010785	ENSODEP00000004070	annotation not available	Vesicle associated membrane protein 8.	0.826