Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001514annotation not available (531 aa)    
Predicted Functional Partners:
PSMB8
Proteasome 20S subunit beta 8.
    
 0.960
PSMD14
Proteasome 26S subunit, non-ATPase 14.
   
 0.950
PSMB2
Proteasome 20S subunit beta 2.
    
 0.939
PSMA7
Proteasome 20S subunit alpha 7.
    
 0.937
PSMB9
Proteasome 20S subunit beta 9.
    
 0.935
ENSODEP00000001559
annotation not available
 
     0.934
ECPAS
Ecm29 proteasome adaptor and scaffold.
   
 
 0.933
PSMB5
Proteasome 20S subunit beta 5.
    
 0.933
PSMB1
Proteasome 20S subunit beta 1.
    
 0.931
PSMB10
Proteasome 20S subunit beta 10.
    
 0.914
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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