ENSODEP00000001520 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001520

annotation not available (450 aa)

Predicted Functional Partners:

HNRNPD

0.927

HNRNPUL1

0.911

HNRNPAB

0.906

ENSODEP00000000796

0.892

ENSODEP00000007327

0.892

ENSODEP00000007709

0.892

ENSODEP00000008169

0.892

ENSODEP00000010023

0.892

ENSODEP00000011795

0.892

ENSODEP00000012590

0.892

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000796	ENSODEP00000001520	ENSODEP00000000796	ENSODEP00000001520	annotation not available	annotation not available	0.892
ENSODEP00000000796	ENSODEP00000008169	ENSODEP00000000796	ENSODEP00000008169	annotation not available	annotation not available	0.902
ENSODEP00000000796	ENSODEP00000010023	ENSODEP00000000796	ENSODEP00000010023	annotation not available	annotation not available	0.902
ENSODEP00000000796	HNRNPAB	ENSODEP00000000796	ENSODEP00000009143	annotation not available	Heterogeneous nuclear ribonucleoprotein A/B.	0.954
ENSODEP00000000796	HNRNPD	ENSODEP00000000796	ENSODEP00000002437	annotation not available	Heterogeneous nuclear ribonucleoprotein D.	0.963
ENSODEP00000000796	HNRNPUL1	ENSODEP00000000796	ENSODEP00000001152	annotation not available	Heterogeneous nuclear ribonucleoprotein U like 1.	0.791
ENSODEP00000001520	ENSODEP00000000796	ENSODEP00000001520	ENSODEP00000000796	annotation not available	annotation not available	0.892
ENSODEP00000001520	ENSODEP00000007327	ENSODEP00000001520	ENSODEP00000007327	annotation not available	annotation not available	0.892
ENSODEP00000001520	ENSODEP00000007709	ENSODEP00000001520	ENSODEP00000007709	annotation not available	annotation not available	0.892
ENSODEP00000001520	ENSODEP00000008169	ENSODEP00000001520	ENSODEP00000008169	annotation not available	annotation not available	0.892
ENSODEP00000001520	ENSODEP00000010023	ENSODEP00000001520	ENSODEP00000010023	annotation not available	annotation not available	0.892
ENSODEP00000001520	ENSODEP00000011795	ENSODEP00000001520	ENSODEP00000011795	annotation not available	annotation not available	0.892
ENSODEP00000001520	ENSODEP00000012590	ENSODEP00000001520	ENSODEP00000012590	annotation not available	annotation not available	0.892
ENSODEP00000001520	HNRNPAB	ENSODEP00000001520	ENSODEP00000009143	annotation not available	Heterogeneous nuclear ribonucleoprotein A/B.	0.906
ENSODEP00000001520	HNRNPD	ENSODEP00000001520	ENSODEP00000002437	annotation not available	Heterogeneous nuclear ribonucleoprotein D.	0.927
ENSODEP00000001520	HNRNPUL1	ENSODEP00000001520	ENSODEP00000001152	annotation not available	Heterogeneous nuclear ribonucleoprotein U like 1.	0.911
ENSODEP00000007327	ENSODEP00000001520	ENSODEP00000007327	ENSODEP00000001520	annotation not available	annotation not available	0.892
ENSODEP00000007327	ENSODEP00000008169	ENSODEP00000007327	ENSODEP00000008169	annotation not available	annotation not available	0.902
ENSODEP00000007327	ENSODEP00000010023	ENSODEP00000007327	ENSODEP00000010023	annotation not available	annotation not available	0.902
ENSODEP00000007327	HNRNPAB	ENSODEP00000007327	ENSODEP00000009143	annotation not available	Heterogeneous nuclear ribonucleoprotein A/B.	0.954