ENSODEP00000001524 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000001524

annotation not available (170 aa)

Predicted Functional Partners:

EIF3H

0.986

EIF3F

0.980

EIF3D

0.980

ENSODEP00000008539

0.977

ENSODEP00000020739

0.977

ENSODEP00000001336

0.972

ENSODEP00000012374

0.972

ENSODEP00000018854

0.966

ENSODEP00000021380

0.966

Fau

0.966

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF3D	EIF3F	ENSODEP00000014944	ENSODEP00000001976	Eukaryotic translation initiation factor 3 subunit D.	Eukaryotic translation initiation factor 3 subunit F.	0.999
EIF3D	EIF3H	ENSODEP00000014944	ENSODEP00000003989	Eukaryotic translation initiation factor 3 subunit D.	Eukaryotic translation initiation factor 3 subunit H.	0.999
EIF3D	ENSODEP00000001336	ENSODEP00000014944	ENSODEP00000001336	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.998
EIF3D	ENSODEP00000001524	ENSODEP00000014944	ENSODEP00000001524	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.980
EIF3D	ENSODEP00000008539	ENSODEP00000014944	ENSODEP00000008539	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.998
EIF3D	ENSODEP00000012374	ENSODEP00000014944	ENSODEP00000012374	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.998
EIF3D	ENSODEP00000018854	ENSODEP00000014944	ENSODEP00000018854	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.967
EIF3D	ENSODEP00000020739	ENSODEP00000014944	ENSODEP00000020739	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.999
EIF3D	ENSODEP00000021380	ENSODEP00000014944	ENSODEP00000021380	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.967
EIF3D	Fau	ENSODEP00000014944	ENSODEP00000024490	Eukaryotic translation initiation factor 3 subunit D.	annotation not available	0.967
EIF3F	EIF3D	ENSODEP00000001976	ENSODEP00000014944	Eukaryotic translation initiation factor 3 subunit F.	Eukaryotic translation initiation factor 3 subunit D.	0.999
EIF3F	EIF3H	ENSODEP00000001976	ENSODEP00000003989	Eukaryotic translation initiation factor 3 subunit F.	Eukaryotic translation initiation factor 3 subunit H.	0.999
EIF3F	ENSODEP00000001336	ENSODEP00000001976	ENSODEP00000001336	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.999
EIF3F	ENSODEP00000001524	ENSODEP00000001976	ENSODEP00000001524	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.980
EIF3F	ENSODEP00000008539	ENSODEP00000001976	ENSODEP00000008539	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.998
EIF3F	ENSODEP00000012374	ENSODEP00000001976	ENSODEP00000012374	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.999
EIF3F	ENSODEP00000018854	ENSODEP00000001976	ENSODEP00000018854	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.975
EIF3F	ENSODEP00000020739	ENSODEP00000001976	ENSODEP00000020739	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.999
EIF3F	ENSODEP00000021380	ENSODEP00000001976	ENSODEP00000021380	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.975
EIF3F	Fau	ENSODEP00000001976	ENSODEP00000024490	Eukaryotic translation initiation factor 3 subunit F.	annotation not available	0.975