Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRAM1L1Translocation associated membrane protein 1 like 1. (361 aa)    
Predicted Functional Partners:
TRAM1
Translocation associated membrane protein 1.
     
  0.943
SEC63
SEC63 homolog, protein translocation regulator.
   
 
 0.824
DDOST
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit.
   
 
 0.787
SSR2
Signal sequence receptor subunit 2.
   
 
 0.732
RPN2
Ribophorin II.
   
 
 0.714
HM13
Histocompatibility minor 13.
   
 
 0.693
ESR1
Estrogen receptor 1.
    
   0.681
SPCS2
Signal peptidase complex subunit 2.
   
 
 0.660
RPN1
Ribophorin I.
   
 
  0.625
CTSB
Cathepsin B.
      
 0.583
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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