PEX2 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PEX2

Peroxisomal biogenesis factor 2. (305 aa)

Predicted Functional Partners:

PEX10

0.999

ENSODEP00000017978

0.999

PEX14

0.993

PEX5

0.991

ENSODEP00000010901

0.972

ENSODEP00000018369

0.972

FAM185A

0.964

PEX5L

0.960

PEX6

0.921

PEX16

0.910

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000010901	ENSODEP00000017978	ENSODEP00000010901	ENSODEP00000017978	annotation not available	annotation not available	0.982
ENSODEP00000010901	FAM185A	ENSODEP00000010901	ENSODEP00000014255	annotation not available	Family with sequence similarity 185 member A.	0.946
ENSODEP00000010901	PEX10	ENSODEP00000010901	ENSODEP00000013532	annotation not available	Peroxisomal biogenesis factor 10.	0.931
ENSODEP00000010901	PEX14	ENSODEP00000010901	ENSODEP00000017017	annotation not available	Peroxisomal biogenesis factor 14.	0.991
ENSODEP00000010901	PEX16	ENSODEP00000010901	ENSODEP00000021980	annotation not available	Peroxisomal biogenesis factor 16.	0.989
ENSODEP00000010901	PEX2	ENSODEP00000010901	ENSODEP00000001543	annotation not available	Peroxisomal biogenesis factor 2.	0.972
ENSODEP00000010901	PEX5	ENSODEP00000010901	ENSODEP00000003213	annotation not available	Peroxisomal biogenesis factor 5.	0.642
ENSODEP00000010901	PEX5L	ENSODEP00000010901	ENSODEP00000002052	annotation not available	Peroxisomal biogenesis factor 5 like.	0.592
ENSODEP00000010901	PEX6	ENSODEP00000010901	ENSODEP00000022139	annotation not available	Peroxisomal biogenesis factor 6.	0.945
ENSODEP00000017978	ENSODEP00000010901	ENSODEP00000017978	ENSODEP00000010901	annotation not available	annotation not available	0.982
ENSODEP00000017978	ENSODEP00000018369	ENSODEP00000017978	ENSODEP00000018369	annotation not available	annotation not available	0.985
ENSODEP00000017978	FAM185A	ENSODEP00000017978	ENSODEP00000014255	annotation not available	Family with sequence similarity 185 member A.	0.969
ENSODEP00000017978	PEX10	ENSODEP00000017978	ENSODEP00000013532	annotation not available	Peroxisomal biogenesis factor 10.	0.999
ENSODEP00000017978	PEX14	ENSODEP00000017978	ENSODEP00000017017	annotation not available	Peroxisomal biogenesis factor 14.	0.998
ENSODEP00000017978	PEX16	ENSODEP00000017978	ENSODEP00000021980	annotation not available	Peroxisomal biogenesis factor 16.	0.940
ENSODEP00000017978	PEX2	ENSODEP00000017978	ENSODEP00000001543	annotation not available	Peroxisomal biogenesis factor 2.	0.999
ENSODEP00000017978	PEX5	ENSODEP00000017978	ENSODEP00000003213	annotation not available	Peroxisomal biogenesis factor 5.	0.998
ENSODEP00000017978	PEX5L	ENSODEP00000017978	ENSODEP00000002052	annotation not available	Peroxisomal biogenesis factor 5 like.	0.985
ENSODEP00000017978	PEX6	ENSODEP00000017978	ENSODEP00000022139	annotation not available	Peroxisomal biogenesis factor 6.	0.959
ENSODEP00000018369	ENSODEP00000017978	ENSODEP00000018369	ENSODEP00000017978	annotation not available	annotation not available	0.985