STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLRN1Clarin 1. (232 aa)    
Predicted Functional Partners:
MYO7A
Myosin VIIA.
      
 0.555
USH1C
USH1 protein network component harmonin.
      
 0.555
USH1G
USH1 protein network component sans.
      
 0.555
USH2A
Usherin.
      
 0.552
PDZD7
PDZ domain containing 7.
      
 0.551
PCDH15
Protocadherin related 15.
      
 0.528
STRC
Stereocilin.
      
 0.521
ENSODEP00000024513
annotation not available
      
 0.477
ENSODEP00000024569
annotation not available
      
 0.477
CACNG2
Calcium voltage-gated channel auxiliary subunit gamma 2.
      
 0.472
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.