CLRN1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLRN1

Clarin 1. (232 aa)

Predicted Functional Partners:

USH1C

0.756

USH1G

0.740

MYO7A

0.739

USH2A

0.720

PDZD7

0.662

PCDH15

0.620

LHFPL5

0.619

ZP2

0.611

CACNG2

0.597

ENSODEP00000018643

0.594

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CACNG2	CLRN1	ENSODEP00000015903	ENSODEP00000001550	Calcium voltage-gated channel auxiliary subunit gamma 2.	Clarin 1.	0.597
CLRN1	CACNG2	ENSODEP00000001550	ENSODEP00000015903	Clarin 1.	Calcium voltage-gated channel auxiliary subunit gamma 2.	0.597
CLRN1	ENSODEP00000018643	ENSODEP00000001550	ENSODEP00000018643	Clarin 1.	annotation not available	0.594
CLRN1	LHFPL5	ENSODEP00000001550	ENSODEP00000022716	Clarin 1.	LHFPL tetraspan subfamily member 5.	0.619
CLRN1	MYO7A	ENSODEP00000001550	ENSODEP00000005419	Clarin 1.	Myosin VIIA.	0.739
CLRN1	PCDH15	ENSODEP00000001550	ENSODEP00000018231	Clarin 1.	Protocadherin related 15.	0.620
CLRN1	PDZD7	ENSODEP00000001550	ENSODEP00000008992	Clarin 1.	PDZ domain containing 7.	0.662
CLRN1	USH1C	ENSODEP00000001550	ENSODEP00000012362	Clarin 1.	USH1 protein network component harmonin.	0.756
CLRN1	USH1G	ENSODEP00000001550	ENSODEP00000012756	Clarin 1.	USH1 protein network component sans.	0.740
CLRN1	USH2A	ENSODEP00000001550	ENSODEP00000020100	Clarin 1.	Usherin.	0.720
CLRN1	ZP2	ENSODEP00000001550	ENSODEP00000014940	Clarin 1.	Zona pellucida glycoprotein 2.	0.611
ENSODEP00000018643	CLRN1	ENSODEP00000018643	ENSODEP00000001550	annotation not available	Clarin 1.	0.594
ENSODEP00000018643	LHFPL5	ENSODEP00000018643	ENSODEP00000022716	annotation not available	LHFPL tetraspan subfamily member 5.	0.738
ENSODEP00000018643	MYO7A	ENSODEP00000018643	ENSODEP00000005419	annotation not available	Myosin VIIA.	0.890
ENSODEP00000018643	PCDH15	ENSODEP00000018643	ENSODEP00000018231	annotation not available	Protocadherin related 15.	0.987
ENSODEP00000018643	PDZD7	ENSODEP00000018643	ENSODEP00000008992	annotation not available	PDZ domain containing 7.	0.595
ENSODEP00000018643	USH1C	ENSODEP00000018643	ENSODEP00000012362	annotation not available	USH1 protein network component harmonin.	0.970
ENSODEP00000018643	USH1G	ENSODEP00000018643	ENSODEP00000012756	annotation not available	USH1 protein network component sans.	0.877
ENSODEP00000018643	USH2A	ENSODEP00000018643	ENSODEP00000020100	annotation not available	Usherin.	0.600
LHFPL5	CLRN1	ENSODEP00000022716	ENSODEP00000001550	LHFPL tetraspan subfamily member 5.	Clarin 1.	0.619