ENSODEP00000001554 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSODEP00000001554

annotation not available (240 aa)

Predicted Functional Partners:

ENSODEP00000010526

0.892

ENSODEP00000022372

0.892

LOC101592056

0.876

SMARCD1

0.833

ENSODEP00000004654

0.747

Hif1an

0.747

SMARCD3

0.716

TRIT1

0.665

FAM107A

0.652

MSANTD4

0.646

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001554	ENSODEP00000004654	ENSODEP00000001554	ENSODEP00000004654	annotation not available	annotation not available	0.747
ENSODEP00000001554	ENSODEP00000010526	ENSODEP00000001554	ENSODEP00000010526	annotation not available	annotation not available	0.892
ENSODEP00000001554	ENSODEP00000022372	ENSODEP00000001554	ENSODEP00000022372	annotation not available	annotation not available	0.892
ENSODEP00000001554	FAM107A	ENSODEP00000001554	ENSODEP00000012726	annotation not available	Family with sequence similarity 107 member A.	0.652
ENSODEP00000001554	Hif1an	ENSODEP00000001554	ENSODEP00000009355	annotation not available	annotation not available	0.747
ENSODEP00000001554	LOC101592056	ENSODEP00000001554	ENSODEP00000018219	annotation not available	annotation not available	0.876
ENSODEP00000001554	MSANTD4	ENSODEP00000001554	ENSODEP00000014906	annotation not available	Myb/SANT DNA binding domain containing 4 with coiled-coils.	0.646
ENSODEP00000001554	SMARCD1	ENSODEP00000001554	ENSODEP00000013844	annotation not available	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.833
ENSODEP00000001554	SMARCD3	ENSODEP00000001554	ENSODEP00000013353	annotation not available	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.716
ENSODEP00000001554	TRIT1	ENSODEP00000001554	ENSODEP00000008203	annotation not available	tRNA isopentenyltransferase 1.	0.665
ENSODEP00000004654	ENSODEP00000001554	ENSODEP00000004654	ENSODEP00000001554	annotation not available	annotation not available	0.747
ENSODEP00000010526	ENSODEP00000001554	ENSODEP00000010526	ENSODEP00000001554	annotation not available	annotation not available	0.892
ENSODEP00000010526	LOC101592056	ENSODEP00000010526	ENSODEP00000018219	annotation not available	annotation not available	0.992
ENSODEP00000022372	ENSODEP00000001554	ENSODEP00000022372	ENSODEP00000001554	annotation not available	annotation not available	0.892
ENSODEP00000022372	LOC101592056	ENSODEP00000022372	ENSODEP00000018219	annotation not available	annotation not available	0.992
FAM107A	ENSODEP00000001554	ENSODEP00000012726	ENSODEP00000001554	Family with sequence similarity 107 member A.	annotation not available	0.652
Hif1an	ENSODEP00000001554	ENSODEP00000009355	ENSODEP00000001554	annotation not available	annotation not available	0.747
LOC101592056	ENSODEP00000001554	ENSODEP00000018219	ENSODEP00000001554	annotation not available	annotation not available	0.876
LOC101592056	ENSODEP00000010526	ENSODEP00000018219	ENSODEP00000010526	annotation not available	annotation not available	0.992
LOC101592056	ENSODEP00000022372	ENSODEP00000018219	ENSODEP00000022372	annotation not available	annotation not available	0.992