STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001554annotation not available (240 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.828
KDM6A
Lysine demethylase 6A.
   
 0.781
KDM6B
Lysine demethylase 6B.
   
 0.781
TEP1
Telomerase associated protein 1.
   
 0.732
MARS1
methionyl-tRNA synthetase 1.
   
 0.727
ENSODEP00000017298
annotation not available
    
 0.718
KATNAL2
Katanin catalytic subunit A1 like 2.
   
 0.710
IFT22
Intraflagellar transport 22.
    
 0.708
PLA2G4A
Phospholipase A2 group IVA.
    
 0.688
ENSODEP00000010526
annotation not available
    
 
 0.686
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.