IGF2BP2 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

IGF2BP2

Insulin like growth factor 2 mRNA binding protein 2. (600 aa)

Predicted Functional Partners:

ENSODEP00000019693

0.969

Igf2bp1

0.969

ENSODEP00000012243

0.945

ENSODEP00000015158

0.945

ENSODEP00000017576

0.945

ELAVL2

0.914

CAPN7

0.873

FAM120A

0.854

STAU1

0.846

HNRNPD

0.845

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPN7	ENSODEP00000012243	ENSODEP00000012339	ENSODEP00000012243	Calpain 7.	annotation not available	0.645
CAPN7	ENSODEP00000015158	ENSODEP00000012339	ENSODEP00000015158	Calpain 7.	annotation not available	0.645
CAPN7	ENSODEP00000017576	ENSODEP00000012339	ENSODEP00000017576	Calpain 7.	annotation not available	0.645
CAPN7	ENSODEP00000019693	ENSODEP00000012339	ENSODEP00000019693	Calpain 7.	annotation not available	0.645
CAPN7	IGF2BP2	ENSODEP00000012339	ENSODEP00000001565	Calpain 7.	Insulin like growth factor 2 mRNA binding protein 2.	0.873
CAPN7	Igf2bp1	ENSODEP00000012339	ENSODEP00000023170	Calpain 7.	annotation not available	0.645
ELAVL2	ENSODEP00000012243	ENSODEP00000003289	ENSODEP00000012243	ELAV like RNA binding protein 2.	annotation not available	0.750
ELAVL2	ENSODEP00000015158	ENSODEP00000003289	ENSODEP00000015158	ELAV like RNA binding protein 2.	annotation not available	0.750
ELAVL2	ENSODEP00000017576	ENSODEP00000003289	ENSODEP00000017576	ELAV like RNA binding protein 2.	annotation not available	0.750
ELAVL2	ENSODEP00000019693	ENSODEP00000003289	ENSODEP00000019693	ELAV like RNA binding protein 2.	annotation not available	0.731
ELAVL2	FAM120A	ENSODEP00000003289	ENSODEP00000013277	ELAV like RNA binding protein 2.	Family with sequence similarity 120A.	0.773
ELAVL2	HNRNPD	ENSODEP00000003289	ENSODEP00000002437	ELAV like RNA binding protein 2.	Heterogeneous nuclear ribonucleoprotein D.	0.502
ELAVL2	IGF2BP2	ENSODEP00000003289	ENSODEP00000001565	ELAV like RNA binding protein 2.	Insulin like growth factor 2 mRNA binding protein 2.	0.914
ELAVL2	Igf2bp1	ENSODEP00000003289	ENSODEP00000023170	ELAV like RNA binding protein 2.	annotation not available	0.731
ELAVL2	STAU1	ENSODEP00000003289	ENSODEP00000008726	ELAV like RNA binding protein 2.	Staufen double-stranded RNA binding protein 1.	0.414
ENSODEP00000012243	CAPN7	ENSODEP00000012243	ENSODEP00000012339	annotation not available	Calpain 7.	0.645
ENSODEP00000012243	ELAVL2	ENSODEP00000012243	ENSODEP00000003289	annotation not available	ELAV like RNA binding protein 2.	0.750
ENSODEP00000012243	ENSODEP00000019693	ENSODEP00000012243	ENSODEP00000019693	annotation not available	annotation not available	0.950
ENSODEP00000012243	FAM120A	ENSODEP00000012243	ENSODEP00000013277	annotation not available	Family with sequence similarity 120A.	0.458
ENSODEP00000012243	HNRNPD	ENSODEP00000012243	ENSODEP00000002437	annotation not available	Heterogeneous nuclear ribonucleoprotein D.	0.818