STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001580annotation not available (176 aa)    
Predicted Functional Partners:
TLR4
Toll like receptor 4.
    
 0.898
ENSODEP00000023864
annotation not available
    
 0.898
ENSODEP00000024578
annotation not available
    
 0.867
ACTR8
Actin related protein 8.
    
 0.841
ACTR5
Actin related protein 5.
    
 0.835
RUVBL1
RuvB like AAA ATPase 1.
    
 0.828
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.753
POLR1E
RNA polymerase I subunit E.
    
 0.752
RPA1
Replication protein A1.
    
 0.747
ENSODEP00000021777
annotation not available
    
 0.737
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.