ENSODEP00000001583 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001583

annotation not available (138 aa)

Predicted Functional Partners:

DCP2

0.992

DDX6

0.991

ENSODEP00000026745

0.991

ENSODEP00000011335

0.990

EDC4

0.990

ENSODEP00000011860

0.960

PATL1

0.950

ENSODEP00000017793

0.935

PIM1

0.926

ENSODEP00000013975

0.924

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCP2	DDX6	ENSODEP00000014448	ENSODEP00000010663	Decapping mRNA 2.	DEAD-box helicase 6.	0.998
DCP2	EDC4	ENSODEP00000014448	ENSODEP00000021942	Decapping mRNA 2.	Enhancer of mRNA decapping 4.	0.999
DCP2	ENSODEP00000001583	ENSODEP00000014448	ENSODEP00000001583	Decapping mRNA 2.	annotation not available	0.992
DCP2	ENSODEP00000011335	ENSODEP00000014448	ENSODEP00000011335	Decapping mRNA 2.	annotation not available	0.999
DCP2	ENSODEP00000011860	ENSODEP00000014448	ENSODEP00000011860	Decapping mRNA 2.	annotation not available	0.999
DCP2	ENSODEP00000013975	ENSODEP00000014448	ENSODEP00000013975	Decapping mRNA 2.	annotation not available	0.911
DCP2	ENSODEP00000017793	ENSODEP00000014448	ENSODEP00000017793	Decapping mRNA 2.	annotation not available	0.970
DCP2	ENSODEP00000026745	ENSODEP00000014448	ENSODEP00000026745	Decapping mRNA 2.	annotation not available	0.999
DCP2	PATL1	ENSODEP00000014448	ENSODEP00000002304	Decapping mRNA 2.	PAT1 homolog 1, processing body mRNA decay factor.	0.994
DDX6	DCP2	ENSODEP00000010663	ENSODEP00000014448	DEAD-box helicase 6.	Decapping mRNA 2.	0.998
DDX6	EDC4	ENSODEP00000010663	ENSODEP00000021942	DEAD-box helicase 6.	Enhancer of mRNA decapping 4.	0.999
DDX6	ENSODEP00000001583	ENSODEP00000010663	ENSODEP00000001583	DEAD-box helicase 6.	annotation not available	0.991
DDX6	ENSODEP00000011335	ENSODEP00000010663	ENSODEP00000011335	DEAD-box helicase 6.	annotation not available	0.999
DDX6	ENSODEP00000011860	ENSODEP00000010663	ENSODEP00000011860	DEAD-box helicase 6.	annotation not available	0.928
DDX6	ENSODEP00000013975	ENSODEP00000010663	ENSODEP00000013975	DEAD-box helicase 6.	annotation not available	0.885
DDX6	ENSODEP00000026745	ENSODEP00000010663	ENSODEP00000026745	DEAD-box helicase 6.	annotation not available	0.999
DDX6	PATL1	ENSODEP00000010663	ENSODEP00000002304	DEAD-box helicase 6.	PAT1 homolog 1, processing body mRNA decay factor.	0.994
DDX6	PIM1	ENSODEP00000010663	ENSODEP00000022633	DEAD-box helicase 6.	Pim-1 proto-oncogene, serine/threonine kinase.	0.954
EDC4	DCP2	ENSODEP00000021942	ENSODEP00000014448	Enhancer of mRNA decapping 4.	Decapping mRNA 2.	0.999
EDC4	DDX6	ENSODEP00000021942	ENSODEP00000010663	Enhancer of mRNA decapping 4.	DEAD-box helicase 6.	0.999