ENSODEP00000001588 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000001588

annotation not available (727 aa)

Predicted Functional Partners:

MED14

0.996

MED13

0.996

MED30

0.995

MED13L

0.995

MED1

0.995

MED16

0.994

ENSODEP00000003065

0.993

MED23

0.993

MED24

0.992

ENSODEP00000024140

0.990

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001588	ENSODEP00000003065	ENSODEP00000001588	ENSODEP00000003065	annotation not available	annotation not available	0.993
ENSODEP00000001588	ENSODEP00000024140	ENSODEP00000001588	ENSODEP00000024140	annotation not available	annotation not available	0.990
ENSODEP00000001588	MED1	ENSODEP00000001588	ENSODEP00000025046	annotation not available	Mediator complex subunit 1.	0.995
ENSODEP00000001588	MED13	ENSODEP00000001588	ENSODEP00000019622	annotation not available	Mediator complex subunit 13.	0.996
ENSODEP00000001588	MED13L	ENSODEP00000001588	ENSODEP00000006838	annotation not available	Mediator complex subunit 13L.	0.995
ENSODEP00000001588	MED14	ENSODEP00000001588	ENSODEP00000002000	annotation not available	Mediator complex subunit 14.	0.996
ENSODEP00000001588	MED16	ENSODEP00000001588	ENSODEP00000016005	annotation not available	Mediator complex subunit 16.	0.994
ENSODEP00000001588	MED23	ENSODEP00000001588	ENSODEP00000010651	annotation not available	Mediator complex subunit 23.	0.993
ENSODEP00000001588	MED24	ENSODEP00000001588	ENSODEP00000024249	annotation not available	Mediator complex subunit 24.	0.992
ENSODEP00000001588	MED30	ENSODEP00000001588	ENSODEP00000004318	annotation not available	Mediator complex subunit 30.	0.995
ENSODEP00000003065	ENSODEP00000001588	ENSODEP00000003065	ENSODEP00000001588	annotation not available	annotation not available	0.993
ENSODEP00000003065	ENSODEP00000024140	ENSODEP00000003065	ENSODEP00000024140	annotation not available	annotation not available	0.996
ENSODEP00000003065	MED1	ENSODEP00000003065	ENSODEP00000025046	annotation not available	Mediator complex subunit 1.	0.999
ENSODEP00000003065	MED13	ENSODEP00000003065	ENSODEP00000019622	annotation not available	Mediator complex subunit 13.	0.999
ENSODEP00000003065	MED13L	ENSODEP00000003065	ENSODEP00000006838	annotation not available	Mediator complex subunit 13L.	0.998
ENSODEP00000003065	MED14	ENSODEP00000003065	ENSODEP00000002000	annotation not available	Mediator complex subunit 14.	0.999
ENSODEP00000003065	MED16	ENSODEP00000003065	ENSODEP00000016005	annotation not available	Mediator complex subunit 16.	0.999
ENSODEP00000003065	MED23	ENSODEP00000003065	ENSODEP00000010651	annotation not available	Mediator complex subunit 23.	0.999
ENSODEP00000003065	MED24	ENSODEP00000003065	ENSODEP00000024249	annotation not available	Mediator complex subunit 24.	0.999
ENSODEP00000003065	MED30	ENSODEP00000003065	ENSODEP00000004318	annotation not available	Mediator complex subunit 30.	0.999