ENSODEP00000001600 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001600

annotation not available (168 aa)

Predicted Functional Partners:

RALA

0.997

RALBP1

0.991

EXOC2

0.989

ENSODEP00000021735

0.974

RGL2

0.971

RGL1

0.970

PLD1

0.952

PLD2

0.952

EXOC8

0.952

ENSODEP00000008144

0.949

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001600	ENSODEP00000008144	ENSODEP00000001600	ENSODEP00000008144	annotation not available	annotation not available	0.949
ENSODEP00000001600	ENSODEP00000021735	ENSODEP00000001600	ENSODEP00000021735	annotation not available	annotation not available	0.974
ENSODEP00000001600	EXOC2	ENSODEP00000001600	ENSODEP00000009102	annotation not available	Exocyst complex component 2.	0.989
ENSODEP00000001600	EXOC8	ENSODEP00000001600	ENSODEP00000025858	annotation not available	Exocyst complex component 8.	0.952
ENSODEP00000001600	PLD1	ENSODEP00000001600	ENSODEP00000009262	annotation not available	Phospholipase D1.	0.952
ENSODEP00000001600	PLD2	ENSODEP00000001600	ENSODEP00000024136	annotation not available	Phospholipase D2.	0.952
ENSODEP00000001600	RALA	ENSODEP00000001600	ENSODEP00000010539	annotation not available	RAS like proto-oncogene A.	0.997
ENSODEP00000001600	RALBP1	ENSODEP00000001600	ENSODEP00000002259	annotation not available	ralA binding protein 1.	0.991
ENSODEP00000001600	RGL1	ENSODEP00000001600	ENSODEP00000013289	annotation not available	Ral guanine nucleotide dissociation stimulator like 1.	0.970
ENSODEP00000001600	RGL2	ENSODEP00000001600	ENSODEP00000023665	annotation not available	Ral guanine nucleotide dissociation stimulator like 2.	0.971
ENSODEP00000008144	ENSODEP00000001600	ENSODEP00000008144	ENSODEP00000001600	annotation not available	annotation not available	0.949
ENSODEP00000008144	ENSODEP00000021735	ENSODEP00000008144	ENSODEP00000021735	annotation not available	annotation not available	0.955
ENSODEP00000008144	RALA	ENSODEP00000008144	ENSODEP00000010539	annotation not available	RAS like proto-oncogene A.	0.985
ENSODEP00000008144	RGL1	ENSODEP00000008144	ENSODEP00000013289	annotation not available	Ral guanine nucleotide dissociation stimulator like 1.	0.860
ENSODEP00000008144	RGL2	ENSODEP00000008144	ENSODEP00000023665	annotation not available	Ral guanine nucleotide dissociation stimulator like 2.	0.841
ENSODEP00000021735	ENSODEP00000001600	ENSODEP00000021735	ENSODEP00000001600	annotation not available	annotation not available	0.974
ENSODEP00000021735	ENSODEP00000008144	ENSODEP00000021735	ENSODEP00000008144	annotation not available	annotation not available	0.955
ENSODEP00000021735	EXOC2	ENSODEP00000021735	ENSODEP00000009102	annotation not available	Exocyst complex component 2.	0.456
ENSODEP00000021735	RALA	ENSODEP00000021735	ENSODEP00000010539	annotation not available	RAS like proto-oncogene A.	0.974
ENSODEP00000021735	RALBP1	ENSODEP00000021735	ENSODEP00000002259	annotation not available	ralA binding protein 1.	0.576