STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001606annotation not available (507 aa)    
Predicted Functional Partners:
NUP58
Nucleoporin 58.
   
 0.996
NUP98
Nucleoporin 98.
   
 0.993
NUP62
Nucleoporin 62.
   
 0.990
NUP188
Nucleoporin 188.
    
 0.989
NUP153
Nucleoporin 153.
   
 0.984
NUP88
Nucleoporin 88.
    
 0.983
ENSODEP00000013849
annotation not available
   
 0.980
NUP85
Nucleoporin 85.
   
 0.979
NUP155
Nucleoporin 155.
   
 0.979
NUP107
Nucleoporin 107.
   
 0.975
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.