STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001606annotation not available (507 aa)    
Predicted Functional Partners:
NUP98
Nucleoporin 98.
   
 0.996
NUP58
Nucleoporin 58.
   
 0.994
NUP153
Nucleoporin 153.
   
 0.994
NUP85
Nucleoporin 85.
   
 0.993
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.993
NUP62
Nucleoporin 62.
   
 0.993
NUP93
Nucleoporin 93.
   
 0.993
NUP133
Nucleoporin 133.
   
 0.992
ENSODEP00000013849
annotation not available
   
 0.992
NUP107
Nucleoporin 107.
   
 0.991
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.