Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CIB3Calcium and integrin binding family member 3. (187 aa)    
Predicted Functional Partners:
TMC2
Transmembrane channel like 2.
    
 0.957
TMC1
Transmembrane channel like 1.
    
 0.930
TMC3
Transmembrane channel like 3.
    
 0.909
CASK
Calcium/calmodulin dependent serine protein kinase.
    
 0.801
LHFPL5
LHFPL tetraspan subfamily member 5.
     
 0.767
BRICD5
BRICHOS domain containing 5.
      
 0.764
ZPLD1
Zona pellucida like domain containing 1.
      
 0.757
LHFPL3
LHFPL tetraspan subfamily member 3.
     
 0.723
LHFPL4
LHFPL tetraspan subfamily member 4.
     
 0.723
ODF3L2
Outer dense fiber of sperm tails 3 like 2.
    
 
 0.717
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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