STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTULINOTU deubiquitinase with linear linkage specificity. (348 aa)    
Predicted Functional Partners:
ENSODEP00000003859
annotation not available
    
 0.998
RBCK1
RANBP2-type and C3HC4-type zinc finger containing 1.
    
 0.994
SHARPIN
SHANK associated RH domain interactor.
    
 0.992
SNX27
Sorting nexin 27.
    
 
 0.976
ENSODEP00000026177
annotation not available
    
 0.973
ENSODEP00000026556
annotation not available
    
 0.973
IRF9
Interferon regulatory factor 9.
    
 0.948
RNF216
Ring finger protein 216.
    
 0.948
ARIH2
Ariadne RBR E3 ubiquitin protein ligase 2.
    
 0.948
ENSODEP00000006216
annotation not available
    
 0.939
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.