Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZFHX4Zinc finger homeobox 4. (3541 aa)    
Predicted Functional Partners:
Chd4
Chromodomain helicase DNA binding protein 4.
    
 
 0.921
TGFB1
Transforming growth factor beta 1.
    
 0.775
RUNX1
RUNX family transcription factor 1.
     
 0.764
RUNX3
RUNX family transcription factor 3.
     
 0.764
RUNX2
RUNX family transcription factor 2.
     
 0.764
BEND3
BEN domain containing 3.
    
  0.663
LCP2
Lymphocyte cytosolic protein 2.
      
 0.655
CHD3
Chromodomain helicase DNA binding protein 3.
    
 
 0.633
CHD5
Chromodomain helicase DNA binding protein 5.
    
 
 0.628
PRR16
Proline rich 16.
      
 0.621
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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