FAM199X protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FAM199X

Family with sequence similarity 199, X-linked. (386 aa)

Predicted Functional Partners:

PDPK1

0.950

MBIP

0.828

ENSODEP00000021195

0.817

WDR5B

0.817

ENSODEP00000027027

0.817

ENSODEP00000004259

0.762

ENSODEP00000016702

0.762

LOC101592056

0.717

FAM83H

0.706

ZSWIM8

0.706

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000004259	FAM199X	ENSODEP00000004259	ENSODEP00000001638	annotation not available	Family with sequence similarity 199, X-linked.	0.762
ENSODEP00000004259	FAM83H	ENSODEP00000004259	ENSODEP00000019194	annotation not available	Family with sequence similarity 83 member H.	0.762
ENSODEP00000004259	LOC101592056	ENSODEP00000004259	ENSODEP00000018219	annotation not available	annotation not available	0.995
ENSODEP00000004259	ZSWIM8	ENSODEP00000004259	ENSODEP00000021165	annotation not available	Zinc finger SWIM-type containing 8.	0.762
ENSODEP00000016702	FAM199X	ENSODEP00000016702	ENSODEP00000001638	annotation not available	Family with sequence similarity 199, X-linked.	0.762
ENSODEP00000016702	FAM83H	ENSODEP00000016702	ENSODEP00000019194	annotation not available	Family with sequence similarity 83 member H.	0.762
ENSODEP00000016702	LOC101592056	ENSODEP00000016702	ENSODEP00000018219	annotation not available	annotation not available	0.995
ENSODEP00000016702	ZSWIM8	ENSODEP00000016702	ENSODEP00000021165	annotation not available	Zinc finger SWIM-type containing 8.	0.762
ENSODEP00000021195	FAM199X	ENSODEP00000021195	ENSODEP00000001638	annotation not available	Family with sequence similarity 199, X-linked.	0.817
ENSODEP00000021195	MBIP	ENSODEP00000021195	ENSODEP00000008469	annotation not available	MAP3K12 binding inhibitory protein 1.	0.957
ENSODEP00000021195	PDPK1	ENSODEP00000021195	ENSODEP00000018579	annotation not available	3-phosphoinositide dependent protein kinase 1.	0.848
ENSODEP00000021195	WDR5B	ENSODEP00000021195	ENSODEP00000026100	annotation not available	WD repeat domain 5B.	0.936
ENSODEP00000027027	FAM199X	ENSODEP00000027027	ENSODEP00000001638	annotation not available	Family with sequence similarity 199, X-linked.	0.817
ENSODEP00000027027	MBIP	ENSODEP00000027027	ENSODEP00000008469	annotation not available	MAP3K12 binding inhibitory protein 1.	0.957
ENSODEP00000027027	PDPK1	ENSODEP00000027027	ENSODEP00000018579	annotation not available	3-phosphoinositide dependent protein kinase 1.	0.848
ENSODEP00000027027	WDR5B	ENSODEP00000027027	ENSODEP00000026100	annotation not available	WD repeat domain 5B.	0.867
FAM199X	ENSODEP00000004259	ENSODEP00000001638	ENSODEP00000004259	Family with sequence similarity 199, X-linked.	annotation not available	0.762
FAM199X	ENSODEP00000016702	ENSODEP00000001638	ENSODEP00000016702	Family with sequence similarity 199, X-linked.	annotation not available	0.762
FAM199X	ENSODEP00000021195	ENSODEP00000001638	ENSODEP00000021195	Family with sequence similarity 199, X-linked.	annotation not available	0.817
FAM199X	ENSODEP00000027027	ENSODEP00000001638	ENSODEP00000027027	Family with sequence similarity 199, X-linked.	annotation not available	0.817