ENSODEP00000001655 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000001655

annotation not available (99 aa)

Predicted Functional Partners:

ENSODEP00000001318

0.441

ENSODEP00000005810

0.441

ENSODEP00000013119

0.441

KCTD2

0.441

ENSODEP00000022031

0.441

ENSODEP00000025866

0.441

TBL3

0.409

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001318	ENSODEP00000001655	ENSODEP00000001318	ENSODEP00000001655	annotation not available	annotation not available	0.441
ENSODEP00000001655	ENSODEP00000001318	ENSODEP00000001655	ENSODEP00000001318	annotation not available	annotation not available	0.441
ENSODEP00000001655	ENSODEP00000005810	ENSODEP00000001655	ENSODEP00000005810	annotation not available	annotation not available	0.441
ENSODEP00000001655	ENSODEP00000013119	ENSODEP00000001655	ENSODEP00000013119	annotation not available	annotation not available	0.441
ENSODEP00000001655	ENSODEP00000022031	ENSODEP00000001655	ENSODEP00000022031	annotation not available	annotation not available	0.441
ENSODEP00000001655	ENSODEP00000025866	ENSODEP00000001655	ENSODEP00000025866	annotation not available	annotation not available	0.441
ENSODEP00000001655	KCTD2	ENSODEP00000001655	ENSODEP00000014597	annotation not available	Potassium channel tetramerization domain containing 2.	0.441
ENSODEP00000001655	TBL3	ENSODEP00000001655	ENSODEP00000018889	annotation not available	Transducin beta like 3.	0.409
ENSODEP00000005810	ENSODEP00000001655	ENSODEP00000005810	ENSODEP00000001655	annotation not available	annotation not available	0.441
ENSODEP00000013119	ENSODEP00000001655	ENSODEP00000013119	ENSODEP00000001655	annotation not available	annotation not available	0.441
ENSODEP00000022031	ENSODEP00000001655	ENSODEP00000022031	ENSODEP00000001655	annotation not available	annotation not available	0.441
ENSODEP00000025866	ENSODEP00000001655	ENSODEP00000025866	ENSODEP00000001655	annotation not available	annotation not available	0.441
KCTD2	ENSODEP00000001655	ENSODEP00000014597	ENSODEP00000001655	Potassium channel tetramerization domain containing 2.	annotation not available	0.441
TBL3	ENSODEP00000001655	ENSODEP00000018889	ENSODEP00000001655	Transducin beta like 3.	annotation not available	0.409