ENSODEP00000001664 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001664

annotation not available (552 aa)

Predicted Functional Partners:

TBK1

0.966

IKBKE

0.963

USP9X

0.887

ENSODEP00000004232

0.862

EIF4A3

0.862

OSMR

0.861

ENSODEP00000003560

0.857

LIF

0.853

IL11

0.853

ENSODEP00000007570

0.851

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4A3	ENSODEP00000001664	ENSODEP00000013936	ENSODEP00000001664	Eukaryotic translation initiation factor 4A3.	annotation not available	0.862
EIF4A3	ENSODEP00000007570	ENSODEP00000013936	ENSODEP00000007570	Eukaryotic translation initiation factor 4A3.	annotation not available	0.980
ENSODEP00000001664	EIF4A3	ENSODEP00000001664	ENSODEP00000013936	annotation not available	Eukaryotic translation initiation factor 4A3.	0.862
ENSODEP00000001664	ENSODEP00000003560	ENSODEP00000001664	ENSODEP00000003560	annotation not available	annotation not available	0.857
ENSODEP00000001664	ENSODEP00000004232	ENSODEP00000001664	ENSODEP00000004232	annotation not available	annotation not available	0.862
ENSODEP00000001664	ENSODEP00000007570	ENSODEP00000001664	ENSODEP00000007570	annotation not available	annotation not available	0.851
ENSODEP00000001664	IKBKE	ENSODEP00000001664	ENSODEP00000008004	annotation not available	Inhibitor of nuclear factor kappa B kinase subunit epsilon.	0.963
ENSODEP00000001664	IL11	ENSODEP00000001664	ENSODEP00000013754	annotation not available	Interleukin 11.	0.853
ENSODEP00000001664	LIF	ENSODEP00000001664	ENSODEP00000003572	annotation not available	LIF interleukin 6 family cytokine.	0.853
ENSODEP00000001664	OSMR	ENSODEP00000001664	ENSODEP00000023615	annotation not available	Oncostatin M receptor.	0.861
ENSODEP00000001664	TBK1	ENSODEP00000001664	ENSODEP00000006527	annotation not available	TANK binding kinase 1.	0.966
ENSODEP00000001664	USP9X	ENSODEP00000001664	ENSODEP00000001820	annotation not available	Ubiquitin specific peptidase 9 X-linked.	0.887
ENSODEP00000003560	ENSODEP00000001664	ENSODEP00000003560	ENSODEP00000001664	annotation not available	annotation not available	0.857
ENSODEP00000003560	IL11	ENSODEP00000003560	ENSODEP00000013754	annotation not available	Interleukin 11.	0.987
ENSODEP00000003560	LIF	ENSODEP00000003560	ENSODEP00000003572	annotation not available	LIF interleukin 6 family cytokine.	0.989
ENSODEP00000003560	OSMR	ENSODEP00000003560	ENSODEP00000023615	annotation not available	Oncostatin M receptor.	0.998
ENSODEP00000004232	ENSODEP00000001664	ENSODEP00000004232	ENSODEP00000001664	annotation not available	annotation not available	0.862
ENSODEP00000004232	ENSODEP00000007570	ENSODEP00000004232	ENSODEP00000007570	annotation not available	annotation not available	0.405
ENSODEP00000007570	EIF4A3	ENSODEP00000007570	ENSODEP00000013936	annotation not available	Eukaryotic translation initiation factor 4A3.	0.980
ENSODEP00000007570	ENSODEP00000001664	ENSODEP00000007570	ENSODEP00000001664	annotation not available	annotation not available	0.851