SPTLC1 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

SPTLC1

Serine palmitoyltransferase long chain base subunit 1. (473 aa)

Predicted Functional Partners:

SPTSSA

0.999

ENSODEP00000015946

0.993

ENSODEP00000010338

0.988

ORMDL3

0.988

KDSR

0.984

ISM1

0.983

ISM2

0.976

SHMT1

0.975

ENSODEP00000017622

0.970

PSPH

0.970

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000010338	ENSODEP00000017622	ENSODEP00000010338	ENSODEP00000017622	annotation not available	annotation not available	0.902
ENSODEP00000010338	KDSR	ENSODEP00000010338	ENSODEP00000007050	annotation not available	3-ketodihydrosphingosine reductase.	0.938
ENSODEP00000010338	ORMDL3	ENSODEP00000010338	ENSODEP00000024095	annotation not available	ORMDL sphingolipid biosynthesis regulator 3.	0.934
ENSODEP00000010338	PSPH	ENSODEP00000010338	ENSODEP00000019973	annotation not available	Phosphoserine phosphatase.	0.892
ENSODEP00000010338	SHMT1	ENSODEP00000010338	ENSODEP00000009633	annotation not available	Serine hydroxymethyltransferase 1.	0.900
ENSODEP00000010338	SPTLC1	ENSODEP00000010338	ENSODEP00000001679	annotation not available	Serine palmitoyltransferase long chain base subunit 1.	0.988
ENSODEP00000010338	SPTSSA	ENSODEP00000010338	ENSODEP00000007506	annotation not available	Serine palmitoyltransferase small subunit A.	0.986
ENSODEP00000015946	ENSODEP00000017622	ENSODEP00000015946	ENSODEP00000017622	annotation not available	annotation not available	0.902
ENSODEP00000015946	KDSR	ENSODEP00000015946	ENSODEP00000007050	annotation not available	3-ketodihydrosphingosine reductase.	0.938
ENSODEP00000015946	ORMDL3	ENSODEP00000015946	ENSODEP00000024095	annotation not available	ORMDL sphingolipid biosynthesis regulator 3.	0.956
ENSODEP00000015946	PSPH	ENSODEP00000015946	ENSODEP00000019973	annotation not available	Phosphoserine phosphatase.	0.892
ENSODEP00000015946	SHMT1	ENSODEP00000015946	ENSODEP00000009633	annotation not available	Serine hydroxymethyltransferase 1.	0.900
ENSODEP00000015946	SPTLC1	ENSODEP00000015946	ENSODEP00000001679	annotation not available	Serine palmitoyltransferase long chain base subunit 1.	0.993
ENSODEP00000015946	SPTSSA	ENSODEP00000015946	ENSODEP00000007506	annotation not available	Serine palmitoyltransferase small subunit A.	0.993
ENSODEP00000017622	ENSODEP00000010338	ENSODEP00000017622	ENSODEP00000010338	annotation not available	annotation not available	0.902
ENSODEP00000017622	ENSODEP00000015946	ENSODEP00000017622	ENSODEP00000015946	annotation not available	annotation not available	0.902
ENSODEP00000017622	ISM1	ENSODEP00000017622	ENSODEP00000008876	annotation not available	Isthmin 1.	0.895
ENSODEP00000017622	ISM2	ENSODEP00000017622	ENSODEP00000016580	annotation not available	Isthmin 2.	0.844
ENSODEP00000017622	PSPH	ENSODEP00000017622	ENSODEP00000019973	annotation not available	Phosphoserine phosphatase.	0.979
ENSODEP00000017622	SHMT1	ENSODEP00000017622	ENSODEP00000009633	annotation not available	Serine hydroxymethyltransferase 1.	0.985