SPTLC1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPTLC1

Serine palmitoyltransferase long chain base subunit 1. (473 aa)

Predicted Functional Partners:

ORMDL3

0.997

SPTSSA

0.995

ENSODEP00000010338

0.995

ENSODEP00000015946

0.995

ISM1

0.993

ISM2

0.992

ENSODEP00000000975

0.991

ENSODEP00000016802

0.991

ENSODEP00000006123

0.988

ENSODEP00000023670

0.988

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000975	ENSODEP00000006123	ENSODEP00000000975	ENSODEP00000006123	annotation not available	annotation not available	0.735
ENSODEP00000000975	ENSODEP00000010338	ENSODEP00000000975	ENSODEP00000010338	annotation not available	annotation not available	0.972
ENSODEP00000000975	ENSODEP00000015946	ENSODEP00000000975	ENSODEP00000015946	annotation not available	annotation not available	0.972
ENSODEP00000000975	ENSODEP00000023670	ENSODEP00000000975	ENSODEP00000023670	annotation not available	annotation not available	0.738
ENSODEP00000000975	ISM1	ENSODEP00000000975	ENSODEP00000008876	annotation not available	Isthmin 1.	0.954
ENSODEP00000000975	ISM2	ENSODEP00000000975	ENSODEP00000016580	annotation not available	Isthmin 2.	0.951
ENSODEP00000000975	ORMDL3	ENSODEP00000000975	ENSODEP00000024095	annotation not available	ORMDL sphingolipid biosynthesis regulator 3.	0.748
ENSODEP00000000975	SPTLC1	ENSODEP00000000975	ENSODEP00000001679	annotation not available	Serine palmitoyltransferase long chain base subunit 1.	0.991
ENSODEP00000000975	SPTSSA	ENSODEP00000000975	ENSODEP00000007506	annotation not available	Serine palmitoyltransferase small subunit A.	0.988
ENSODEP00000006123	ENSODEP00000000975	ENSODEP00000006123	ENSODEP00000000975	annotation not available	annotation not available	0.735
ENSODEP00000006123	ENSODEP00000010338	ENSODEP00000006123	ENSODEP00000010338	annotation not available	annotation not available	0.960
ENSODEP00000006123	ENSODEP00000015946	ENSODEP00000006123	ENSODEP00000015946	annotation not available	annotation not available	0.960
ENSODEP00000006123	ENSODEP00000016802	ENSODEP00000006123	ENSODEP00000016802	annotation not available	annotation not available	0.734
ENSODEP00000006123	ISM1	ENSODEP00000006123	ENSODEP00000008876	annotation not available	Isthmin 1.	0.954
ENSODEP00000006123	ISM2	ENSODEP00000006123	ENSODEP00000016580	annotation not available	Isthmin 2.	0.951
ENSODEP00000006123	ORMDL3	ENSODEP00000006123	ENSODEP00000024095	annotation not available	ORMDL sphingolipid biosynthesis regulator 3.	0.727
ENSODEP00000006123	SPTLC1	ENSODEP00000006123	ENSODEP00000001679	annotation not available	Serine palmitoyltransferase long chain base subunit 1.	0.988
ENSODEP00000006123	SPTSSA	ENSODEP00000006123	ENSODEP00000007506	annotation not available	Serine palmitoyltransferase small subunit A.	0.979
ENSODEP00000010338	ENSODEP00000000975	ENSODEP00000010338	ENSODEP00000000975	annotation not available	annotation not available	0.972
ENSODEP00000010338	ENSODEP00000006123	ENSODEP00000010338	ENSODEP00000006123	annotation not available	annotation not available	0.960