ENSODEP00000001688 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

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Coexpression

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[Homology]

Score

ENSODEP00000001688

annotation not available (257 aa)

Predicted Functional Partners:

ERCC1

0.912

ENSODEP00000003627

0.859

ENSODEP00000020966

0.859

ENSODEP00000026177

0.855

ENSODEP00000026556

0.855

ZRANB1

0.769

ENSODEP00000018854

0.660

ENSODEP00000021380

0.660

Fau

0.660

HERC2

0.658

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001688	ENSODEP00000003627	ENSODEP00000001688	ENSODEP00000003627	annotation not available	annotation not available	0.859
ENSODEP00000001688	ENSODEP00000018854	ENSODEP00000001688	ENSODEP00000018854	annotation not available	annotation not available	0.660
ENSODEP00000001688	ENSODEP00000020966	ENSODEP00000001688	ENSODEP00000020966	annotation not available	annotation not available	0.859
ENSODEP00000001688	ENSODEP00000021380	ENSODEP00000001688	ENSODEP00000021380	annotation not available	annotation not available	0.660
ENSODEP00000001688	ENSODEP00000026177	ENSODEP00000001688	ENSODEP00000026177	annotation not available	annotation not available	0.855
ENSODEP00000001688	ENSODEP00000026556	ENSODEP00000001688	ENSODEP00000026556	annotation not available	annotation not available	0.855
ENSODEP00000001688	ERCC1	ENSODEP00000001688	ENSODEP00000009793	annotation not available	ERCC excision repair 1, endonuclease non-catalytic subunit.	0.912
ENSODEP00000001688	Fau	ENSODEP00000001688	ENSODEP00000024490	annotation not available	annotation not available	0.660
ENSODEP00000001688	HERC2	ENSODEP00000001688	ENSODEP00000006149	annotation not available	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	0.658
ENSODEP00000001688	ZRANB1	ENSODEP00000001688	ENSODEP00000023860	annotation not available	Zinc finger RANBP2-type containing 1.	0.769
ENSODEP00000003627	ENSODEP00000001688	ENSODEP00000003627	ENSODEP00000001688	annotation not available	annotation not available	0.859
ENSODEP00000003627	ENSODEP00000018854	ENSODEP00000003627	ENSODEP00000018854	annotation not available	annotation not available	0.660
ENSODEP00000003627	ENSODEP00000021380	ENSODEP00000003627	ENSODEP00000021380	annotation not available	annotation not available	0.660
ENSODEP00000003627	ENSODEP00000026177	ENSODEP00000003627	ENSODEP00000026177	annotation not available	annotation not available	0.912
ENSODEP00000003627	ENSODEP00000026556	ENSODEP00000003627	ENSODEP00000026556	annotation not available	annotation not available	0.912
ENSODEP00000003627	ERCC1	ENSODEP00000003627	ENSODEP00000009793	annotation not available	ERCC excision repair 1, endonuclease non-catalytic subunit.	0.829
ENSODEP00000003627	Fau	ENSODEP00000003627	ENSODEP00000024490	annotation not available	annotation not available	0.660
ENSODEP00000003627	HERC2	ENSODEP00000003627	ENSODEP00000006149	annotation not available	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	0.911
ENSODEP00000003627	ZRANB1	ENSODEP00000003627	ENSODEP00000023860	annotation not available	Zinc finger RANBP2-type containing 1.	0.809
ENSODEP00000018854	ENSODEP00000001688	ENSODEP00000018854	ENSODEP00000001688	annotation not available	annotation not available	0.660