ENSODEP00000001689 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001689

annotation not available (121 aa)

Predicted Functional Partners:

NDC80

0.645

IMMT

0.632

NUF2

0.602

PPOX

0.601

ANKRD16

0.537

ABCB6

0.536

SLC25A38

0.536

NSMCE4A

0.536

IBA57

0.532

SYTL1

0.530

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB6	ENSODEP00000001689	ENSODEP00000008379	ENSODEP00000001689	ATP binding cassette subfamily B member 6 (Langereis blood group).	annotation not available	0.536
ABCB6	PPOX	ENSODEP00000008379	ENSODEP00000009366	ATP binding cassette subfamily B member 6 (Langereis blood group).	Protoporphyrinogen oxidase.	0.665
ABCB6	SLC25A38	ENSODEP00000008379	ENSODEP00000014020	ATP binding cassette subfamily B member 6 (Langereis blood group).	Solute carrier family 25 member 38.	0.688
ANKRD16	ENSODEP00000001689	ENSODEP00000005515	ENSODEP00000001689	Ankyrin repeat domain 16.	annotation not available	0.537
ANKRD16	NSMCE4A	ENSODEP00000005515	ENSODEP00000024037	Ankyrin repeat domain 16.	NSE4 homolog A, SMC5-SMC6 complex component.	0.680
ENSODEP00000001689	ABCB6	ENSODEP00000001689	ENSODEP00000008379	annotation not available	ATP binding cassette subfamily B member 6 (Langereis blood group).	0.536
ENSODEP00000001689	ANKRD16	ENSODEP00000001689	ENSODEP00000005515	annotation not available	Ankyrin repeat domain 16.	0.537
ENSODEP00000001689	IBA57	ENSODEP00000001689	ENSODEP00000001425	annotation not available	Iron-sulfur cluster assembly factor IBA57.	0.532
ENSODEP00000001689	IMMT	ENSODEP00000001689	ENSODEP00000004297	annotation not available	Inner membrane mitochondrial protein.	0.632
ENSODEP00000001689	NDC80	ENSODEP00000001689	ENSODEP00000008664	annotation not available	NDC80 kinetochore complex component.	0.645
ENSODEP00000001689	NSMCE4A	ENSODEP00000001689	ENSODEP00000024037	annotation not available	NSE4 homolog A, SMC5-SMC6 complex component.	0.536
ENSODEP00000001689	NUF2	ENSODEP00000001689	ENSODEP00000008324	annotation not available	NUF2 component of NDC80 kinetochore complex.	0.602
ENSODEP00000001689	PPOX	ENSODEP00000001689	ENSODEP00000009366	annotation not available	Protoporphyrinogen oxidase.	0.601
ENSODEP00000001689	SLC25A38	ENSODEP00000001689	ENSODEP00000014020	annotation not available	Solute carrier family 25 member 38.	0.536
ENSODEP00000001689	SYTL1	ENSODEP00000001689	ENSODEP00000004886	annotation not available	Synaptotagmin like 1.	0.530
IBA57	ENSODEP00000001689	ENSODEP00000001425	ENSODEP00000001689	Iron-sulfur cluster assembly factor IBA57.	annotation not available	0.532
IBA57	SLC25A38	ENSODEP00000001425	ENSODEP00000014020	Iron-sulfur cluster assembly factor IBA57.	Solute carrier family 25 member 38.	0.553
IMMT	ENSODEP00000001689	ENSODEP00000004297	ENSODEP00000001689	Inner membrane mitochondrial protein.	annotation not available	0.632
NDC80	ENSODEP00000001689	ENSODEP00000008664	ENSODEP00000001689	NDC80 kinetochore complex component.	annotation not available	0.645
NDC80	NUF2	ENSODEP00000008664	ENSODEP00000008324	NDC80 kinetochore complex component.	NUF2 component of NDC80 kinetochore complex.	0.999