TNFRSF11B protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TNFRSF11B

TNF receptor superfamily member 11b. (402 aa)

Predicted Functional Partners:

TNFSF11

0.999

TNFSF14

0.951

CD40LG

0.927

TNFSF10

0.920

TNFSF15

0.909

LTB

0.901

LTA

0.901

TNF

0.851

BTLA

0.848

TRAF6

0.789

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BTLA	CD40LG	ENSODEP00000014770	ENSODEP00000003860	B and T lymphocyte associated.	CD40 ligand.	0.529
BTLA	LTA	ENSODEP00000014770	ENSODEP00000024378	B and T lymphocyte associated.	Lymphotoxin alpha.	0.469
BTLA	TNF	ENSODEP00000014770	ENSODEP00000024408	B and T lymphocyte associated.	Tumor necrosis factor.	0.417
BTLA	TNFRSF11B	ENSODEP00000014770	ENSODEP00000001696	B and T lymphocyte associated.	TNF receptor superfamily member 11b.	0.848
BTLA	TNFSF14	ENSODEP00000014770	ENSODEP00000020946	B and T lymphocyte associated.	TNF superfamily member 14.	0.661
BTLA	TNFSF15	ENSODEP00000014770	ENSODEP00000024604	B and T lymphocyte associated.	TNF superfamily member 15.	0.458
CD40LG	BTLA	ENSODEP00000003860	ENSODEP00000014770	CD40 ligand.	B and T lymphocyte associated.	0.529
CD40LG	LTA	ENSODEP00000003860	ENSODEP00000024378	CD40 ligand.	Lymphotoxin alpha.	0.857
CD40LG	LTB	ENSODEP00000003860	ENSODEP00000024153	CD40 ligand.	Lymphotoxin beta.	0.781
CD40LG	TNF	ENSODEP00000003860	ENSODEP00000024408	CD40 ligand.	Tumor necrosis factor.	0.844
CD40LG	TNFRSF11B	ENSODEP00000003860	ENSODEP00000001696	CD40 ligand.	TNF receptor superfamily member 11b.	0.927
CD40LG	TNFSF11	ENSODEP00000003860	ENSODEP00000008513	CD40 ligand.	TNF superfamily member 11.	0.794
CD40LG	TNFSF14	ENSODEP00000003860	ENSODEP00000020946	CD40 ligand.	TNF superfamily member 14.	0.855
CD40LG	TNFSF15	ENSODEP00000003860	ENSODEP00000024604	CD40 ligand.	TNF superfamily member 15.	0.664
CD40LG	TRAF6	ENSODEP00000003860	ENSODEP00000023288	CD40 ligand.	TNF receptor associated factor 6.	0.746
LTA	BTLA	ENSODEP00000024378	ENSODEP00000014770	Lymphotoxin alpha.	B and T lymphocyte associated.	0.469
LTA	CD40LG	ENSODEP00000024378	ENSODEP00000003860	Lymphotoxin alpha.	CD40 ligand.	0.857
LTA	LTB	ENSODEP00000024378	ENSODEP00000024153	Lymphotoxin alpha.	Lymphotoxin beta.	0.999
LTA	TNF	ENSODEP00000024378	ENSODEP00000024408	Lymphotoxin alpha.	Tumor necrosis factor.	0.979
LTA	TNFRSF11B	ENSODEP00000024378	ENSODEP00000001696	Lymphotoxin alpha.	TNF receptor superfamily member 11b.	0.901