ENSODEP00000001697 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSODEP00000001697

annotation not available (248 aa)

Predicted Functional Partners:

TNNI3

0.974

TNNT2

0.966

TNNI1

0.945

TNNT3

0.938

TNNT1

0.924

TNNI2

0.921

ACTC1

0.917

MYL1

0.900

TMOD1

0.874

ENSODEP00000009792

0.842

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTC1	ENSODEP00000001697	ENSODEP00000004327	ENSODEP00000001697	Actin alpha cardiac muscle 1.	annotation not available	0.917
ACTC1	ENSODEP00000009792	ENSODEP00000004327	ENSODEP00000009792	Actin alpha cardiac muscle 1.	annotation not available	0.758
ACTC1	MYL1	ENSODEP00000004327	ENSODEP00000010466	Actin alpha cardiac muscle 1.	Myosin light chain 1.	0.946
ACTC1	TMOD1	ENSODEP00000004327	ENSODEP00000004081	Actin alpha cardiac muscle 1.	Tropomodulin 1.	0.762
ACTC1	TNNI1	ENSODEP00000004327	ENSODEP00000016496	Actin alpha cardiac muscle 1.	Troponin I1, slow skeletal type.	0.924
ACTC1	TNNI2	ENSODEP00000004327	ENSODEP00000023960	Actin alpha cardiac muscle 1.	Troponin I2, fast skeletal type.	0.877
ACTC1	TNNI3	ENSODEP00000004327	ENSODEP00000015463	Actin alpha cardiac muscle 1.	Troponin I3, cardiac type.	0.998
ACTC1	TNNT1	ENSODEP00000004327	ENSODEP00000014376	Actin alpha cardiac muscle 1.	Troponin T1, slow skeletal type.	0.902
ACTC1	TNNT2	ENSODEP00000004327	ENSODEP00000014397	Actin alpha cardiac muscle 1.	Troponin T2, cardiac type.	0.996
ACTC1	TNNT3	ENSODEP00000004327	ENSODEP00000023441	Actin alpha cardiac muscle 1.	Troponin T3, fast skeletal type.	0.902
ENSODEP00000001697	ACTC1	ENSODEP00000001697	ENSODEP00000004327	annotation not available	Actin alpha cardiac muscle 1.	0.917
ENSODEP00000001697	ENSODEP00000009792	ENSODEP00000001697	ENSODEP00000009792	annotation not available	annotation not available	0.842
ENSODEP00000001697	MYL1	ENSODEP00000001697	ENSODEP00000010466	annotation not available	Myosin light chain 1.	0.900
ENSODEP00000001697	TMOD1	ENSODEP00000001697	ENSODEP00000004081	annotation not available	Tropomodulin 1.	0.874
ENSODEP00000001697	TNNI1	ENSODEP00000001697	ENSODEP00000016496	annotation not available	Troponin I1, slow skeletal type.	0.945
ENSODEP00000001697	TNNI2	ENSODEP00000001697	ENSODEP00000023960	annotation not available	Troponin I2, fast skeletal type.	0.921
ENSODEP00000001697	TNNI3	ENSODEP00000001697	ENSODEP00000015463	annotation not available	Troponin I3, cardiac type.	0.974
ENSODEP00000001697	TNNT1	ENSODEP00000001697	ENSODEP00000014376	annotation not available	Troponin T1, slow skeletal type.	0.924
ENSODEP00000001697	TNNT2	ENSODEP00000001697	ENSODEP00000014397	annotation not available	Troponin T2, cardiac type.	0.966
ENSODEP00000001697	TNNT3	ENSODEP00000001697	ENSODEP00000023441	annotation not available	Troponin T3, fast skeletal type.	0.938