STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSMD1CUB and Sushi multiple domains 1. (3309 aa)    
Predicted Functional Partners:
TNR
Tenascin R.
    
 0.831
TNN
Tenascin N.
    
 0.831
TNC
Tenascin C.
    
 0.831
GRIK2
Glutamate ionotropic receptor kainate type subunit 2.
   
 
 0.709
TYROBP
TYRO protein tyrosine kinase binding protein.
    
 0.642
GRIK1
Glutamate ionotropic receptor kainate type subunit 1.
   
 
 0.630
KCNIP2
Potassium voltage-gated channel interacting protein 2.
    
 
 0.621
KCNIP4
Potassium voltage-gated channel interacting protein 4.
    
 
 0.621
PGC
Progastricsin.
    
 0.605
RIPK4
Receptor interacting serine/threonine kinase 4.
    
 0.603
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.