STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNE1Spectrin repeat containing nuclear envelope protein 1. (8638 aa)    
Predicted Functional Partners:
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.998
SUN2
Sad1 and UNC84 domain containing 2.
    
 0.997
LMNA
Lamin A/C.
    
 0.980
EMD
Emerin.
    
 
 0.952
FHOD1
Formin homology 2 domain containing 1.
    
 
 0.928
SUN3
Sad1 and UNC84 domain containing 3.
    
 0.918
SUN5
Sad1 and UNC84 domain containing 5.
    
 0.907
SPAG4
Sperm associated antigen 4.
    
 0.890
ENSODEP00000018617
annotation not available
   
 0.881
ENSODEP00000019744
annotation not available
   
 0.881
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.